f5e7c8d09ffc0862dfb65f2f9194731c *DESCRIPTION
68bb9ab215ae4b272ec27b23211bae93 *INDEX
bb087882b665fe8e24160a58aedd00ce *LICENSE
a521d82d59be3d2a5ece795d870bafbb *Meta/Rd.rds
3e748a81f3c695db0e193138341ef897 *Meta/data.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
1fc7366f5666cfd3930262dfc81cff61 *Meta/hsearch.rds
1772c09ae8e6d7aa07ef121f9f2c65b6 *Meta/links.rds
891a4abcdd70c8f691cc0000baf849ab *Meta/nsInfo.rds
1f0e4e843d3b033f1d996ae838790cdc *Meta/package.rds
d7061a7a420a71a6e4b564de0890a3fc *Meta/vignette.rds
529d6739f5d3e673afc9a295d7862ebe *NAMESPACE
fad59674387f98c24c21f8f0359c6381 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/CNEr
3d96f35b9378cf577074ff2f2711c23e *R/CNEr.rdb
83403d3390498fffd49a24febb3229b6 *R/CNEr.rdx
a595fc03c3b3d57f048c4e21a18c7cd2 *data/CNEDanRer10Hg38.rda
85fca72fe185084dbb12393bbb56c94d *data/CNEHg38DanRer10.rda
d7aff5e8ce701e2ce81feb5ba8434b73 *data/axisTrack.rda
05e4a1691e623dbc5d5132c625c3e952 *data/cneFinalListDanRer10Hg38.rda
3e2c63d5839dce07a3f8a017924633e6 *data/cpgIslands.rda
f636989efeff6b5effb53b546919718f *data/grangesPairsForDotplot.rda
fb9424ea5abd0f82ef1105e8462b8a1a *data/refGenes.rda
9a69371c94a2e1b3c0314f8e3ceb6782 *doc/CNEr.R
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0f399a35cf4d483a0f0841c83e4aaa2c *doc/PairwiseWholeGenomeAlignment.R
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5fe54fa153d8ed86ace9301a0b2b7d82 *doc/index.html
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83a080592fbc9a9e1e3c8045874bc4b6 *extdata/hg38.danRer10.net.axt
109773cc892befc7f16e64051a2f3180 *extdata/rmsk.fa
ecfff71e276939f8799b675c0035c131 *help/AnIndex
f760c63a7d41c9df395e5242c3da1913 *help/CNEr.rdb
6fac8017489962009e78e7b17ec3c772 *help/CNEr.rdx
6c69e369b28ec2407f8ef06e5516c50b *help/aliases.rds
599182ae9434456e92dccbcfdd3f676e *help/paths.rds
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895b9ba5eec911ae9640b9c902e2bd6e *html/axtChain.html
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1f2f6ae4211fe675adb0fff8acb22494 *html/chainMergeSort.html
ca74a6163adcd8962bb05d3707fe6976 *html/chainNetSyntenic.html
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deb29e03f09c1f20b009550a88a81dc8 *html/cneFinalListDanRer10Hg38.html
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35d185482d4e53a8bee6f08ceb7f3234 *html/readAncoraIntoSQLite.html
2d2f011a9bc22505aa00dfcfc0d8ffca *html/readAxt.html
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346fd2d4b697bba8491d1cb059b0e7aa *html/readCNERangesFromSQLite.html
7375a5bfde7f295af29ca5f410014f50 *html/reverseCigar.html
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cdbed07d676c1dbef4d967b61aa98c03 *html/scoringMatrix.html
ae38e4754d9b4c7b9e47896b5c4702f8 *html/subAxt-methods.html
86cd933fcbad52ddfa4d27b42f442782 *html/syntenicDotplot.html
1ea7739147b55c5f131a5fb77470da9e *html/writeAxt.html
a6520337ef840a8afa432e8d732fbf99 *libs/i386/CNEr.dll
db319725f323f8875222158f96ddd958 *libs/x64/CNEr.dll
ec85324af0f35f446e7f94ec7477fd3c *obsolete/CNEr.Rnw
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0b52e0839eedfa011db6788f30472403 *obsolete/class.r
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0a1fe70559c587a9104001f5203af75d *obsolete/src/compile
9e3c821c3f64ccfe466aa466d5f82ec5 *scripts/danRer10Pipeline.R
5f67d785a452ecc6f8168088a7b8b0c9 *scripts/prepareData.R
