makeAncoraFiles {CNEr} | R Documentation

## makeAncoraFiles

### Description

Make ancora format files from `GRangePairs` of CNE

### Usage

      makeAncoraFiles(cne, outputDir = ".",
                      genomeFirst = "first", genomeSecond = "second",
                      threshold = "50_50")

### Arguments

`cne` | `GRangePairs` object of CNE.
`outputDir` | `character`(1): the output directory of ‘Bed’ and ‘BigWig’ files.
`genomeFirst,genomeSecond` | `character`(1): the genome name of the first and second species.
`threshold` | `character`(1): the threshold used to identify the CNEs in the format of "50_50" etc

### Value

The filenames of output.

### Note

This function is mainly for internal use in Lenhard group.

### Author(s)

Ge Tan

### See Also

`readAncora`

### Examples

      data(cneFinalListDanRer10Hg38)
      cne <- CNEFinal(cneFinalListDanRer10Hg38[["45_50"]])
      makeAncoraFiles(cne, genomeFirst = "danRer10", genomeSecond = "hg38",
                      threshold = "45_50")

[Package CNEr version 1.20.0 Index]