summary {CNEr} | R Documentation

## Utility functions related to Axt alignment

### Description

A collection of different functions used to deal with `Axt` object.

### Usage

      summary(object, ...) ## mismatch number and proportion

### Arguments

`object` | An `Axt` object
`...` | Currently not used.

### Value

A `table` object with the counts of mismatches, insertions, deletions and the matches of each base.

### Author(s)

Ge Tan

### Examples

      axtFilesHg38DanRer10 <- file.path(system.file("extdata", package="CNEr"),
                                       "hg38.danRer10.net.axt")
      axtHg38DanRer10 <- readAxt(axtFilesHg38DanRer10)
      summary(axtHg38DanRer10)

[Package CNEr version 1.20.0 Index]