82c00b01afab8cc7247470e55d2775e7 *CITATION
1ea84b8aeac186b9f3949c2fbbe78045 *DESCRIPTION
7cba324e068e87cb387ecfb23ef44ab7 *INDEX
39f5c7313dfa45092230dd9fa485642f *Meta/Rd.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
bff9a2a6d782c76cf8962ccfb53ac875 *Meta/hsearch.rds
0a563ace990eb0cd1467a10b4c91f626 *Meta/links.rds
b4a806a33d65bb694f569f15592b673e *Meta/nsInfo.rds
cc00a64136ed790b135a4403d93d1781 *Meta/package.rds
fbe457ea1a11203c5bb23eed30cc9d96 *Meta/vignette.rds
fb2f09a9ac778560823fe610bc127c50 *NAMESPACE
50bf515341fb7350db3cb7849d9fdf35 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/CHRONOS
2ced58659af9746c091542d0a1d7a4e6 *R/CHRONOS.rdb
a74846434a03888af48d8e8160d271c2 *R/CHRONOS.rdx
397602b565a494a6baef4802e8f2a069 *doc/CHRONOS.R
7cbdd0127ad5f77a0ee7c6ee3b48063a *doc/CHRONOS.Rmd
31b7c0e35744e341cfc77e418ef6eaa4 *doc/CHRONOS.pdf
f9260aa5f28bca1bcb77cbf2f18f4926 *doc/index.html
8d1c8068f1e84c53b28cbe095f4801f5 *extdata/Downloads/KEGG/hsa/hsa04915.xml
40ef2ba0fbdc3b2a3a78eddadb990099 *extdata/Downloads/KEGG/hsa/hsa04917.xml
bd05b84234ad3f33ae6ea7516c7f4f97 *extdata/Downloads/KEGG/hsa/hsa04930.xml
263f5c1323dd479aa9781f0455f831ca *extdata/Downloads/KEGG/hsa/hsa05031.xml
5c86930303076b56fffb2124659ee722 *extdata/Downloads/mirbase/miRNAmaps_cel.RData
a0cb7ea78b15e55988d9ac247456bcbe *extdata/Downloads/mirbase/miRNAmaps_cfa.RData
20656607818c5a6e0f0999336c998947 *extdata/Downloads/mirbase/miRNAmaps_dme.RData
6ac71ed83a95d7c3be06257ba71cfe4c *extdata/Downloads/mirbase/miRNAmaps_dre.RData
d801f193d9043e618fc4db0cd5a12bab *extdata/Downloads/mirbase/miRNAmaps_gga.RData
848308837e8a4b8c8c9dda5b2b3b0338 *extdata/Downloads/mirbase/miRNAmaps_hsa.RData
f26276ab1d447631f168ed71619f0300 *extdata/Downloads/mirbase/miRNAmaps_mmu.RData
d886c18f5539936ff080e8a078f91513 *extdata/Downloads/mirbase/miRNAmaps_oar.RData
61f80721ee625b915c5e278e32f1878d *extdata/Downloads/mirbase/miRNAmaps_rno.RData
ba0338a0619071b90c76159b19b7dda0 *extdata/Examples/data.RData
8d1c8068f1e84c53b28cbe095f4801f5 *extdata/Examples/kgml/hsa04915.xml
40ef2ba0fbdc3b2a3a78eddadb990099 *extdata/Examples/kgml/hsa04917.xml
bd05b84234ad3f33ae6ea7516c7f4f97 *extdata/Examples/kgml/hsa04930.xml
263f5c1323dd479aa9781f0455f831ca *extdata/Examples/kgml/hsa05031.xml
80be6b7034da70420088ae883e122025 *extdata/User/TarBase.xlsx
b73847dc20f74e19d50f266e54a900a9 *extdata/User/interestingGenes.txt
f5bd80c56bd4310f22a950f561b4db72 *extdata/User/mRNAexpressions.txt
6209f09eb733f87ac17256483bfcef3a *extdata/User/miRNAexpressions.txt
6da5e89fa7bb7b55bef94a3f3fbeb067 *extdata/User/miRecords.xlsx
67b9999ac058bfbe67206f9d90700dbe *help/AnIndex
28bd98f320e5819b458409e1d1c07afa *help/CHRONOS.rdb
ce2acb93d7baaabda1e9f2cf21509aac *help/CHRONOS.rdx
3df88625eec6b4cb1ae3b55eff4c9793 *help/aliases.rds
e9677872e46b1ba423ac0d41bde03162 *help/paths.rds
d51ad8f201ad0478429afadac4292496 *html/00Index.html
cc1984c7472c14c11078105a5f8a3e56 *html/CHRONOSrun.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
a8a91fcd9c1fc61ea1fbb168b41beae7 *html/convertMiRNANomenclature.html
432b3f56f76abd7a4dc631f40d13b84c *html/convertNomenclature.html
bcfa3f35acf129b27c2787e9a079b85f *html/createPathwayGraphs.html
dee8ea3e5df767583371db81476cf8a7 *html/downloadKEGGPathwayList.html
63d8e72ee96f886dfffb14e6292ddbb4 *html/downloadMiRecords.html
8604abbe26b956394217c5c9bde722df *html/downloadPathways.html
67db190e32919f8bf823bca2cbc05857 *html/extractLinearSubpathways.html
e31d4fde495cf5ffd6568e31b4ba230f *html/extractNonLinearSubpathways.html
fc861b08218da81f3c46602389db67ef *html/getEdgeTypes.html
bcd221102c0b447113045b6d1ca88f89 *html/importExpressions.html
92b88d9edb2c60ae1595987fbbef51f0 *html/pathwayMeasures.html
a5e1a89565a53c5ec52d31ebf2871a3c *html/scoreSubpathways.html
e0932c8015ab58126699c2610d72c8a6 *html/subpathwayKEGGmap.html
62682973b9f0dc90170c7531f7eda1c8 *html/subpathwayMiRNAs.html
888cc3384e9ad5de414aebb2e0e46b20 *html/visualizeResults.html
4618e85cf7e05a7a8a825e6203258c4d *java/CHRONOS.jar
f26364f968916f546b7b86cf122f27c3 *unitTests/test_CHRONOSrun.R
4f7aefd3040ac2c26db999d47096f53d *unitTests/test_pathwayToGraph.R
3d1e948699f5b4b9d0c25fa99afce3c6 *unitTests/test_subExtractionLinear.R
b5a2804bef03d6cca7315e983cd6852d *unitTests/test_subExtractionNonLinear.R
8c9ceaeb0876827e50e9468aadb3f67b *unitTests/test_subRefinement.R
3100a07ec828065bfc818a701ef293e3 *unitTests/test_subVisualization.R
