PlotTree {CHETAH} | R Documentation

## Plots the chetah classification tree with nodes numbered

### Description

Plots the chetah classification tree with nodes numbered

### Usage

    PlotTree(input, col = NULL, col_nodes = NULL, return = FALSE,
      no_bgc = FALSE, plot_limits = c(-0.4, 0.1), labelsize = 6)

### Arguments

`input` | a SingleCellExperiment on which `CHETAHclassifier` has been run
`col` | a vector of colors, with the names of the reference cell types
`col_nodes` | a vector of colors, ordered for node 1 till the last node
`return` | instead of printing, return the ggplot object
`no_bgc` | remove the background color from the node numbers
`plot_limits` | define the Decreasing the former further is usefull when the labels are cut of the plot (default = c(-0,25, 01)).
`labelsize` | the size of the intermediate and leaf node labels (default = 6)

### Value

A ggplot object of the classification tree

### Examples

    PlotTree(input = input_mel)

[Package CHETAH version 1.0.5 Index]