RenameBelowNode {CHETAH} | R Documentation

## In the CHETAH classification, replace the name of a Node and all the names of the final and intermediate types under that Node.

### Description

In the CHETAH classification, replace the name of a Node and all the names of the final and intermediate types under that Node.

### Usage

    RenameBelowNode(input, whichnode, replacement, nodes_exclude = NULL,
      types_exclude = NULL, node_only = FALSE, return_clas = FALSE)

### Arguments

`input` | a SingleCellExperiment on which `CHETAHclassifier` has been run
`whichnode` | the number of the Node
`replacement` | a character vector that replaces the names under the selected Node
`nodes_exclude` | optional the names of the types that should NOT be replaced
`types_exclude` | optional numbers of the Nodes under the selected Node, that should NOT be replaced
`node_only` | only rename the Node itself, without affecting the types under that Node
`return_clas` | Instead of returning the SingleCellExperiment, only return the classification vector

### Value

The SingleCellExperiment with the new classification or if 'return_clas = TRUE' the classification vector.

### Examples

    ## In the example data replace all T-cell subtypes by "T cell"
    input_mel <- RenameBelowNode(input = input_mel, whichnode = 7, replacement = "T cell")

[Package CHETAH version 1.0.5 Index]