# Convex Analysis of Mixtures for Tissue Heterogeneity Characterization

## Documentation for package ‘CAMTHC’ version 1.2.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

CAMTHC-package | CAMTHC: A package for Tissue Heterogeneity Characterization.
AfromMarkers | Proportion matrix estimation from marker genes
Amat | Deconvoluted matrix accessors
Amat-method | Deconvoluted matrix accessors
AS-accessor | Deconvoluted matrix accessors
CAM | Convex Analysis of Mixtures
CAMASest | A and S matrix estimation by CAM
CAMASObj | Class "CAMASObj"
CAMASObj-class | Class "CAMASObj"
CAMMGCluster | MG cluster detection for CAM
CAMMGObj | Class "CAMMGObj"
CAMMGObj-class | Class "CAMMGObj"
CAMObj | Class "CAMObj"
CAMObj-class | Class "CAMObj"
CAMPrep | Data preprocessing for CAM
CAMPrepObj | Class "CAMPrepObj"
CAMPrepObj-class | Class "CAMPrepObj"
CAMTHC | CAMTHC: A package for Tissue Heterogeneity Characterization.
cornerSort | Candidate combinations as corners
MDL | Minimum Description Length
MDLObj | Class "MDLObj"
MDLObj-class | Class "MDLObj"
MGsforA | Marker genes detected by CAM for estimating A
MGstatistic | Statistics for ranking marker genes
PCAmat | Dimension-reduction loading matrix accessor
PCAmat-method | Dimension-reduction loading matrix accessor
plot-method | Minimum Description Length
ratMix3 | Gene expression data downsampled from GSE19380
redoASest | Re-estimate A, S matrix
reselectMG | Reselect markers by thresholding
sffsHull | Sequential Forward Floating Selection (SFFS) to approximate convex hull
simplexplot | The plot of scatter simplex
Smat | Deconvoluted matrix accessors
Smat-method | Deconvoluted matrix accessors
XWProj | Perspective projection to obtain simplex