loadRBD {BubbleTree} | R Documentation

## loadRBD

### Description

load the RBD data

### Usage

    loadRBD(.Object, rbd, total.mark = NA)

    ## S4 method for signature 'BTreePredictor'
    loadRBD(.Object, rbd, total.mark = NA)

### Arguments

`.Object` | the object
`rbd` | rbd object
`total.mark` | total mark

### Value

.Object populated with the RBD list with updated segment size

### Examples

    load(system.file("data", "allRBD.lst.RData", package="BubbleTree"))

    btreepredictor <- new("BTreePredictor")
    btreepredictor@config$cutree.h <- 0.15

    high.ploidy <- rep(TRUE, length(allRBD.lst))
    high.purity <- rep(TRUE, length(allRBD.lst))

    high.ploidy[c("sam6",
                  "ovary.wgs",
                  "ovary.wes",
                  "TCGA-06-0145-01A-01W-0224-08",
                  "TCGA-13-1500-01A-01D-0472-01",
                  "TCGA-AO-A0JJ-01A-11W-A071-09")] <- FALSE

    high.purity[c("sam6", "ovary.wgs", "ovary.wes")] <- FALSE

    nn <- "sam6"

    rbd <- allRBD.lst[[nn]]
    btreepredictor@config$high.ploidy <- high.ploidy[nn]
    btreepredictor@config$high.purity <- high.purity[nn]
    btreepredictor <- loadRBD(btreepredictor, rbd)

[Package BubbleTree version 2.14.0 Index]