1139699640120fe53fca238d491d43d0 *DESCRIPTION
0014e77731c11256b108bc3707cc3431 *INDEX
c872843bfdd8ac7d62b00c44dbc7f8e5 *Meta/Rd.rds
dca5c532d7e265ca1d7a2dc759d4e6a3 *Meta/data.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
353d32ed484b2da3b5ed39327deebe94 *Meta/hsearch.rds
15509337a8d8ed17434a11ca83242d98 *Meta/links.rds
29bc523678adcc19231b33808ae3aac0 *Meta/nsInfo.rds
32c47b9756eefcd744d2c8d47d64030c *Meta/package.rds
82890059b657c3515bbc393156e6c192 *Meta/vignette.rds
f8f54ee6874371f794731741fce51ccb *NAMESPACE
3a5fbb3686117c9533c9649b898fb26c *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/Biostrings
123f13c18154a78d6bff7f39fa9fd5ce *R/Biostrings.rdb
93e29d5c19ca4645534bca711c397867 *R/Biostrings.rdx
fb21544885b0d8e223dc707a19f703a6 *data/BLOSUM100.rda
370ae409745a34652b50f6c0992a7c36 *data/BLOSUM45.rda
ff21fdf7ae6c26d41265485e06678c47 *data/BLOSUM50.rda
938f1640bbcee65ce83726127c8efa8f *data/BLOSUM62.rda
ec70a69370ee7b924a1521bd22a0b92a *data/BLOSUM80.rda
4bb649b15a1c70fdc6beb4ea37ca8d58 *data/HNF4alpha.rda
b85025df056de88ad4e0ec260b4fbd3e *data/PAM120.rda
d790bbcef52f77bdbac03ca4fe317a0d *data/PAM250.rda
5ab6a6fb04f2bb2011c96abdea970b87 *data/PAM30.rda
d234baa0914f6233478aa0687fdbe10c *data/PAM40.rda
8533b9535b841e231b9babd78d584885 *data/PAM70.rda
d1f902614de1a9eba90d8387690c2688 *data/phiX174Phage.rda
ea5bd4d16695006aab9061c351649bb6 *data/srPhiX174.rda
e566417a897993c19e4b81e517778b6c *data/yeastSEQCHR1.rda
3efc1f8f1ed38992daa06eebf7089093 *doc/Biostrings2Classes.R
d7f69eedb9db937ef0b727cd1d558b8d *doc/Biostrings2Classes.Rnw
67648ba49a452580315c2bd406dd136f *doc/Biostrings2Classes.pdf
865d1bbb87a1c74c54539c6482016f15 *doc/BiostringsQuickOverview.Rnw
3e6a3ccbf3460c8939b4b5317d907489 *doc/BiostringsQuickOverview.pdf
ace2aaa19a8c155063245051e600608b *doc/MultipleAlignments.R
61f53dbee2860c3e5cd6924d8e158129 *doc/MultipleAlignments.Rnw
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dd1d84bc6924d7da1e51f96a0b6c7090 *doc/PairwiseAlignments.R
1196f29d3fb5633b5c61c8b5828ac550 *doc/PairwiseAlignments.Rnw
04e019173cf36f5647a5f5c767e1f2e3 *doc/PairwiseAlignments.pdf
c464dac6b998f0d563b32be23d69e3e4 *doc/index.html
2a20cd27e459126e737ef5d753ebddbe *doc/matchprobes.R
b239f15493ac1bc5ab95d1afd25a2b28 *doc/matchprobes.Rnw
4d5b64b5b21704cfd0c7eb7a09f02671 *doc/matchprobes.pdf
78e8db3ebcbc095287e6fd8ccfe0e1a2 *extdata/Phylip.txt
fce14be25eab8521b6ee474b4c36a7df *extdata/README
24604bc9ec4790d5d590a623edea5548 *extdata/Sc.fa
1a6fe1b8caec191eb16265cc5b1d7563 *extdata/Sp.fa
11861abec072717c887a753e28f05f56 *extdata/dm3_upstream2000.fa.gz
cfea9d61b851d60768c0751e17ab9937 *extdata/fastaEx.fa
c4114941da5b3499beff7b3f87c84166 *extdata/hg18chr8_gap.txt
76897b4820e1ed23b787a171ae4d3b5a *extdata/hg18chrY_gap.txt
3f5e79e34a204b72bb52b2e5d2b79f19 *extdata/msx2_mRNA.aln
23770dfd9eb85ab715b4cc28268bbc42 *extdata/s_1_sequence.txt
6210f3d073b676bc7bed60172a72c3e3 *extdata/someORF.fa
2fc0b8e9625d6ebebf8fca9cb7737ebd *extdata/someORF.fa.gz
a0baf83424f9851d18e2815aa67e4ba9 *help/AnIndex
83ef5f5c0ffa90f07e907a7651238dfb *help/Biostrings.rdb
96de235685f353ff1e690be1cb95e529 *help/Biostrings.rdx
2330d27c8b45c094e6c94718a6db8b38 *help/aliases.rds
94d7f66917b2706ed705a15df86bb6d7 *help/paths.rds
ed4955a4a66c9a79d6461c3a6eb1a178 *html/00Index.html
ccd9c57d9cd290e6308e62a3c947bab1 *html/AAString-class.html
96ba40068ba3031de7787359f10e702e *html/AMINO_ACID_CODE.html
7e3f21b12c059ccf0143c822ebe7c6a0 *html/AlignedXStringSet-class.html
e234d5da116bd026640da734f3ad6b38 *html/Biostrings-internals.html
dee1e3d43ad17a60877510655e164830 *html/DNAString-class.html
ca607806228b2554754fb95aef9e9f34 *html/GENETIC_CODE.html
72616708e38fecfec59c47feecff0558 *html/HNF4alpha.html
d2932339ade152ed7fdc8598867eef43 *html/IUPAC_CODE_MAP.html
0408d6098bf2cce1e99bebafb447f894 *html/InDel-class.html
f2df7863b2a8e45eb747292510e20775 *html/MIndex-class.html
161a6755458ab07f1835fe9f0d06a371 *html/MaskedXString-class.html
5d1ff1a46e14d9fcc978986a21698514 *html/MultipleAlignment-class.html
71033130fc86fef9657aac6c3464296e *html/PDict-class.html
1ff7ee1e0202c3cbeec44aab9240eb1d *html/PairwiseAlignments-class.html
3f1169dc4ee1ea17663124bc909dac04 *html/PairwiseAlignments-io.html
0d5d44ac1c27b8429cc6144a9058a411 *html/QualityScaledXStringSet-class.html
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1c1472bcb9fd8b43bbe02e3434fcda8c *html/RNAString-class.html
9720f75092cbffe55d00daba8933871b *html/XString-class.html
b4d3a3e6bf935664386c1b1e11f813bc *html/XStringPartialMatches-class.html
bcf0280e017e7397b060fdebc9ccbe0d *html/XStringQuality-class.html
350df83434c6e0a15b83c089848d7537 *html/XStringSet-class.html
4504fa2ea7482e2af47e48cb51c14942 *html/XStringSet-comparison.html
e8bb59f551142cbeb795d0a83ec022ef *html/XStringSet-io.html
066f31843b408b7ab450af13cd8c41fa *html/XStringSetList-class.html
dfbf918736e7e5a186e686140e721ab0 *html/XStringViews-class.html
2f1d58b68b10ed7fe1a985bb69fededa *html/align-utils.html
34707de98c5370619ee8f1271e00a46a *html/chartr.html
e4870d4debda59cbdbf4a85ca52f10df *html/detail.html
46366f2582616f1259ff92ee9ea89f5c *html/dinucleotideFrequencyTest.html
acb2e5aba15fc5b812322d76a0c9f4c4 *html/findPalindromes.html
71f3f7b3cd9da756da170bf8de966bb8 *html/getSeq.html
f12b47f008da0142281fd8d0326d985f *html/gregexpr2.html
79e97eeff06566e682bb4bcffabe0a87 *html/injectHardMask.html
d69cfc2f04597bcc0c1a9bd61b42690a *html/letter.html
ba52745a6758d5fa3b7792f86d5d788a *html/letterFrequency.html
21b12ade9812beaeb56e88dc09b5e8d0 *html/longestConsecutive.html
698868fcd23c1c69ea6283ecede460d4 *html/lowlevel-matching.html
59057da455399fe1a9247557313a535c *html/maskMotif.html
cc424c111d09e3a380f4a7b2d569324c *html/match-utils.html
adce36452722b58ec5bb78d173a125b0 *html/matchLRPatterns.html
bb3f913ec4c9674d78831025de285349 *html/matchPDict-exact.html
b6692dbadcdcaf3223d693431768a9fe *html/matchPDict-inexact.html
e316ee5eec46752bafce91c607689226 *html/matchPWM.html
1c54bac705cd4bce88deb74d5864acaa *html/matchPattern.html
9a767894b84526f1838cbc850d0bac6a *html/matchProbePair.html
ecaf7137cb049ed695d0ef4ef603fe91 *html/matchprobes.html
199cf4d85987c99268f0895aa9924668 *html/misc.html
9b368c61d06164afba7adbb4380f9bfe *html/needwunsQS.html
80caec25df8796ed385379ca4b9a7d58 *html/nucleotideFrequency.html
b5fd5936fd0530460b7797e83a5502da *html/padAndClip.html
60d449fbfad5cc7b14f51542a060858f *html/pairwiseAlignment.html
e78c8de171ac8507bc13b854954f03cf *html/phiX174Phage.html
275d2ba07a0e96b1ebb99c245522ebf2 *html/pid.html
68482679675e5bfdef391cb2192d484f *html/pmatchPattern.html
c873c384598b3201304b22e1aed59ea8 *html/replaceAt.html
b8c6ee27133db0b757752adcc48bde19 *html/replaceLetterAt.html
aab15e164223a40a33c42e8feb6a803a *html/reverseComplement.html
58203d7aeb36b7e5601efd5ddd9295c1 *html/stringDist.html
b4b7bc44f7bb4fa479b3f674fc1b2d1b *html/substitution_matrices.html
fc3a8598712afa02926184f0bf9545c0 *html/toComplex.html
06bfb35d51f057c6acc775d184355e45 *html/translate.html
bbc42f9a8b37fa58909ef8e5789556d1 *html/trimLRPatterns.html
d4241ed5c3103d08c2849202eef665ea *html/xscat.html
0ff9f05e6739b3287d9f62d422486bab *html/yeastSEQCHR1.html
018adb74d849e8af2c0137070a885e7a *include/Biostrings_defines.h
85307fa7cb5fde749d8691637f311f74 *include/Biostrings_interface.h
f0863ead2abb45524e2a2074c9a8eee7 *include/_Biostrings_stubs.c
554e6f8b134d518c2e1dbe25e3dd2ad9 *libs/i386/Biostrings.dll
7950d829726367a375de10cbeac7ad0b *libs/x64/Biostrings.dll
16f044e2cdb85f2d44f501610554df57 *unitTests/test_MultipleAlignment.R
1437c2c15ae9d298a46c40bdc46455f9 *unitTests/test_XString.R
3005f58f4f937842a2813c4cb40f2c6f *unitTests/test_XStringSet.R
46c6cf375691dccb047582d39ca71bef *unitTests/test_XStringSetList.R
c6fed7d62d87e8fd0fd23f978a072ba9 *unitTests/test_findPalindromes.R
5a4fe6582d86f20f68c627d1efd511c0 *unitTests/test_matchDNAPattern.R.FIXME
0371bd65424b6b0160dd18f537333cc0 *unitTests/test_matchPDict.R
81024370010e243c14bd882b4cb9a727 *unitTests/test_pairwiseAlignment.R
407a2929d7f9fce74bd30e731a492477 *unitTests/test_twoWayAlphabetFrequency.R
