BioMM                   BioMM end-to-end prediction
BioMMreconData          Reconstruct stage-2 data by supervised machine
                        learning prediction
BioMMstage1pca          Reconstruct stage-2 data by PCA
BioMMstage2pred         Prediction performance for stage-2 data using
                        supervised machine learning
baseGLMnet              Prediction by generalized linear regression
                        models
baseModel               Base supervised machine learning models for
                        prediction
baseRandForest          Prediction by random forest
baseSVM                 Prediction by SVM
classifiACC             Compute the classification accuracy
getDataAfterFS          Return the data after feature selection
getMetrics              Compute the evaluation metrics
omics2chrlist           Map individual probes into chromosome
omics2genelist          Map individual probes into gene
omics2pathlist          Map individual probes into pathway
plotRankedFeature       Plot top outcome-associated features
plotVarExplained        Plot data summary statistics
predByBS                Bootstrap resampling prediction via supervised
                        machine learning with feature selection
predByCV                Cross validation prediction by supervised
                        machine learning and feature selection
predByFS                Prediction by supervised machine learning along
                        with feature selection
