rmvSpliceVariant {BiGGR} | R Documentation

## Remove splicing variants from the database.

### Description

Removes alternative splicing information from the database.

### Usage

    rmvSpliceVariant(gene.info)

### Arguments

`gene.info` | A reaction gene maping from the ReconX database created from functions `extractGeneAssociations`

### Value

A n x 2 dimentional dataframe of Reaction-Gene(Entrez number) mapping from ReconX database

### Author(s)

Anand Gavai <anand.gavai@bioinformatics.nl>, Hannes Hettling

### References

Thiele, I. et al. Nat Biotech, 2013

### Examples

    data(Recon2)
    gene.info <- extractGeneAssociations(Recon2)

    gene.info<-do.call(rbind.data.frame,gene.info)
    colnames(gene.info)<-c("GPR")
    gene.info$react_id<-row.names(gene.info)
    gene.info<-gene.info[,c(2,1)]
    rownames(gene.info)<-NULL

    react_gene_map<-rmvSpliceVariant(gene.info)

[Package BiGGR version 1.20.0 Index]