summaryQC {BaalChIP} | R Documentation

## Method summaryQC

### Description

Method summaryQC

Generates summary of QC result.

### Usage

    summaryQC(.Object)

    ## S4 method for signature 'BaalChIP'
    summaryQC(.Object)

### Arguments

`.Object` | An object of the `BaalChIP` class.

### Value

A list with two elements:

- `filtering_stats` containing the number of variants that were filtered out in each filter category and the total number that 'pass' all filters.

- `average_stats` containing the average number and average percentage of variants in each filter category, averaged across all analysed groups.

### Author(s)

Ines de Santiago

### See Also

`BaalChIP.run`, `plotQC`

### Examples

    data('BaalObject')
    summaryQC(BaalObject)

[Package BaalChIP version 1.10.0 Index]