# Generated by roxygen2: do not edit by hand

export(BASiCS_DenoisedCounts)
export(BASiCS_DenoisedRates)
export(BASiCS_DetectHVG)
export(BASiCS_DetectLVG)
export(BASiCS_Filter)
export(BASiCS_LoadChain)
export(BASiCS_MCMC)
export(BASiCS_Sim)
export(BASiCS_TestDE)
export(BASiCS_VarThresholdSearchHVG)
export(BASiCS_VarThresholdSearchLVG)
export(BASiCS_VarianceDecomp)
export(BASiCS_diagHist)
export(BASiCS_diagPlot)
export(BASiCS_effectiveSize)
export(BASiCS_showFit)
export(makeExampleBASiCS_Data)
export(newBASiCS_Chain)
export(newBASiCS_Data)
exportClasses(BASiCS_Chain)
exportClasses(BASiCS_Summary)
exportMethods(Summary)
exportMethods(colnames)
exportMethods(displayChainBASiCS)
exportMethods(displaySummaryBASiCS)
exportMethods(plot)
exportMethods(rownames)
exportMethods(show)
exportMethods(subset)
exportMethods(updateObject)
exportPattern("^[^\\Hidden]")
importClassesFrom(Biobase,Versioned)
importFrom(KernSmooth,bkde2D)
importFrom(MASS,mvrnorm)
importFrom(Rcpp,evalCpp)
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,metadata)
importFrom(SingleCellExperiment,"isSpike<-")
importFrom(SingleCellExperiment,clearSpikes)
importFrom(SingleCellExperiment,counts)
importFrom(SingleCellExperiment,isSpike)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,colData)
importFrom(coda,HPDinterval)
importFrom(coda,effectiveSize)
importFrom(coda,mcmc)
importFrom(cowplot,plot_grid)
importFrom(data.table,fread)
importFrom(ggExtra,ggMarginal)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_ribbon)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_fill_gradientn)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_x_log10)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,scale_y_log10)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,theme_minimal)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(grDevices,adjustcolor)
importFrom(grDevices,colorRampPalette)
importFrom(graphics,abline)
importFrom(graphics,barplot)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,par)
importFrom(graphics,points)
importFrom(graphics,segments)
importFrom(graphics,smoothScatter)
importFrom(matrixStats,colMeans2)
importFrom(matrixStats,colMedians)
importFrom(matrixStats,colVars)
importFrom(matrixStats,rowMeans2)
importFrom(matrixStats,rowMedians)
importFrom(matrixStats,rowVars)
importFrom(methods,.hasSlot)
importFrom(methods,Summary)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,show)
importFrom(methods,slotNames)
importFrom(stats,acf)
importFrom(stats,median)
importFrom(stats,model.matrix)
importFrom(stats,rgamma)
importFrom(stats,rpois)
importFrom(stats,runif)
importFrom(stats4,plot)
importFrom(utils,packageVersion)
importFrom(utils,write.table)
importFrom(viridis,scale_color_viridis)
importFrom(viridis,scale_fill_viridis)
importMethodsFrom(BiocGenerics,colnames)
importMethodsFrom(BiocGenerics,counts)
importMethodsFrom(BiocGenerics,rownames)
importMethodsFrom(BiocGenerics,subset)
importMethodsFrom(BiocGenerics,updateObject)
importMethodsFrom(scran,computeSumFactors)
useDynLib(BASiCS)
