biDNAcopy.findCNVs {AneuFinder} | R Documentation

## Find copy number variations (DNAcopy, bivariate)

### Description

`biDNAcopy.findCNVs` classifies the binned read counts into several states which represent copy-number-variation using read count information from both strands.

### Usage

    biDNAcopy.findCNVs(binned.data, ID = NULL, CNgrid.start = 0.5)

### Arguments

`binned.data` | A GRanges-class object with binned read counts.
`ID` | An identifier that will be used to identify this sample in various downstream functions. Could be the file name of the `binned.data` for example.
`CNgrid.start` | Start parameter for the CNgrid variable. Very empiric. Set to 1.5 for normal data and 0.5 for Strand-seq data.

### Value

An `aneuHMM` object.

[Package AneuFinder version 1.12.1 Index]