inferAltAllele {AllelicImbalance} | R Documentation

## inferAltAllele

### Description

inference of the alternate allele based on count data

### Arguments

`x` | `matrix` see examples
`return.class` | class of returned object
`allele.source` | 'arank'
`verbose` | make function more talkative
`...` | arguments to forward to internal functions

### Details

The inference essentially ranks all alleles and the most expressed allele not declared as reference will be inferred as the alternative allele. At the moment only inference of bi-allelic alternative alleles are available.

### Author(s)

Jesper R. Gadin, Lasse Folkersen

### Examples

    #load data
    data(ASEset)

    alt <- inferAltAllele(ASEset)

[Package AllelicImbalance version 1.22.0 Index]