DetectedAI-summary {AllelicImbalance} | R Documentation

## DetectedAI summary

### Description

Summary helper functions for the DetectedAI-class

### Usage

    frequency_vs_threshold_variable_summary(x, ...)

    ## S4 method for signature 'DetectedAI'
    frequency_vs_threshold_variable_summary(x,
      var = "threshold.count.sample", return.class = "matrix", ...)

    detectedAI_vs_threshold_variable_summary(x, ...)

    ## S4 method for signature 'DetectedAI'
    detectedAI_vs_threshold_variable_summary(x,
      var = "threshold.count.sample")

    usedSNPs_vs_threshold_variable_summary(x, ...)

    ## S4 method for signature 'DetectedAI'
    usedSNPs_vs_threshold_variable_summary(x,
      var = "threshold.count.sample")

### Arguments

`x` | detectedAI object
`...` | pass on variables internally
`var` | string, see details for available options
`return.class` | 'matrix' or 'array'

### Details

Summary helper functions. The documentation will be improved before next release.

### Author(s)

Jesper R. Gadin, Lasse Folkersen

### Examples

    #some example code here
    #generate example
    data(ASEset)
    a <- ASEset
    dai <- detectAI(a,
    			threshold.count.sample=1:50,
    			threshold.frequency=seq(0,0.5,by=0.01),
    			threshold.delta.frequency=seq(0,0.5,by=0.01),
    			threshold.pvalue=rev(seq(0.001,0.05, by=0.005))
    )

    frequency_vs_threshold_variable_summary(dai)

[Package AllelicImbalance version 1.22.0 Index]