# Mixture Nested Effects Models

## Documentation for package ‘mnem’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

app | Processed scRNAseq from pooled CRISPR screens
bootstrap | Bootstrap.
clustNEM | Cluster NEM.
createApp | Creating app data.
fitacc | Simulation accuracy.
fuzzyindex | Calculate fuzzy ground truth.
getAffinity | Calculate responsibilities.
getIC | Calculate negative penalized log likelihood.
hamSim | Accuracy for two phis.
mnem | Mixture NEMs - main function.
mnemh | Hierarchical mixture.
mnemk | Learn the number of components K and optimize the mixture.
plot.bootmnem | Plot bootstrap mnem result.
plot.mnem | Plot mnem result.
plot.mnemsim | Plot simulated mixture.
plotConvergence | Plot convergence of EM
plotDnf | Plot disjunctive normal form.
simData | Simulate data.