Package: karyoploteR
Type: Package
Title: Plot customizable linear genomes displaying arbitrary data
Version: 1.8.2
Date: 2017-05-03
Author: Bernat Gel <bgel@igtp.cat>
Maintainer: Bernat Gel <bgel@igtp.cat>
Description: karyoploteR creates karyotype plots of arbitrary genomes and offers
    a complete set of functions to plot arbitrary data on them. It mimicks many
    R base graphics functions coupling them with a coordinate change function 
    automatically mapping the chromosome and data coordinates into the plot 
    coordinates. In addition to the provided data plotting functions, it is 
    easy to add new ones.
License: Artistic-2.0
Depends: R (>= 3.4), regioneR, GenomicRanges, methods
Imports: regioneR, GenomicRanges, IRanges, Rsamtools, stats, graphics,
        memoise, rtracklayer, GenomeInfoDb, S4Vectors, biovizBase,
        digest, bezier, GenomicFeatures, bamsignals
Suggests: BiocStyle, knitr, testthat, magrittr,
        BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene,
        pasillaBamSubset
URL: https://github.com/bernatgel/karyoploteR
BugReports: https://github.com/bernatgel/karyoploteR/issues
VignetteBuilder: knitr
biocViews: Visualization, CopyNumberVariation, Sequencing, Coverage,
        DNASeq, ChIPSeq, MethylSeq, DataImport, OneChannel
NeedsCompilation: no
RoxygenNote: 6.1.0
git_url: https://git.bioconductor.org/packages/karyoploteR
git_branch: RELEASE_3_8
git_last_commit: 5773aaa
git_last_commit_date: 2018-11-08
Date/Publication: 2018-11-08
Packaged: 2018-11-09 02:45:23 UTC; biocbuild
