A R/Bioconductor package for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics data

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Documentation for package ‘trackViewer’ version 1.18.3

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trackViewer-package Minimal designed plotting tool for genomic data
$-method Class '"trackStyle"'
$<--method Class '"trackStyle"'
addArrowMark Add arrow mark to the figure at a given position
addGuideLine Add guide lines to the tracks
browseTracks browse tracks
coverageGR calculate coverage
dandelion.plot dandelion.plots
geneModelFromTxdb Prepare gene model from an object of TxDb
geneTrack track from TxDb
getCurTrackViewport Get current track viewport
getLocation get genomic location by gene symbol
gieStain color sheme for the schema for Chromosome Band (Ideogram)
gridPlot plot GRanges metadata
GRoperator GRanges operator
ideogramPlot plot ideogram with data
importBam Reading data from a BAM file
importData Reading data from a BED or WIG file to RleList
importScore Reading data from a BED or WIG file
loadIdeogram load ideogram from UCSC
lolliplot Lolliplots
optimizeStyle Optimize the style of plot
parse2GRanges parse text into GRanges
parseWIG convert WIG format track to BED format track
plotGInteractions plot GInteractions
plotGRanges plot GRanges data
plotIdeo plot ideogram
plotOneIdeo plot ideogram with data for one chromosome
pos Class '"pos"'
pos-class Class '"pos"'
setTrackStyleParam Class '"trackStyle"'
setTrackStyleParam-method Class '"trackStyle"'
setTrackViewerStyleParam Class '"trackViewerStyle"'
setTrackViewerStyleParam-method Class '"trackViewerStyle"'
setTrackXscaleParam Class '"trackStyle"'
setTrackXscaleParam-method Class '"trackStyle"'
setTrackYaxisParam Class '"trackStyle"'
setTrackYaxisParam-method Class '"trackStyle"'
show-method Class '"trackStyle"'
track Class '"trackStyle"'
track-class Class '"trackStyle"'
trackList List of tracks
trackList-class List of tracks
trackStyle Class '"trackStyle"'
trackStyle-class Class '"trackStyle"'
trackViewer Minimal designed plotting tool for genomic data
trackViewerStyle Class '"trackViewerStyle"'
trackViewerStyle-class Class '"trackViewerStyle"'
viewGene plot tracks based on gene name
viewTracks plot the tracks
xscale Class '"xscale"'
xscale-class Class '"xscale"'
yaxisStyle Class '"yaxisStyle"'
yaxisStyle-class Class '"yaxisStyle"'