| slingPseudotime {slingshot} | R Documentation |
Extract the matrix of pseudotime values or cells' weights along each lineage.
slingPseudotime(x, ...) slingCurveWeights(x) ## S4 method for signature 'SlingshotDataSet' slingPseudotime(x, na = TRUE) ## S4 method for signature 'SingleCellExperiment' slingPseudotime(x, na = TRUE) ## S4 method for signature 'SlingshotDataSet' slingCurveWeights(x) ## S4 method for signature 'SingleCellExperiment' slingCurveWeights(x)
x |
an object containing |
... |
additional parameters to be passed to object-specific methods. |
na |
logical. If |
an n by L matrix representing each cell's pseudotime
along each lineage.
an n by L matrix of cell weights along
each lineage.
SlingshotDataSet: returns the matrix of pseudotime values from a
SlingshotDataSet object.
SingleCellExperiment: returns the matrix of pseudotime values from a
SingleCellExperiment object.
SlingshotDataSet: returns the matrix of cell weights along each
lineage from a SlingshotDataSet object.
SingleCellExperiment: returns the matrix of cell weights along each
lineage from a SingleCellExperiment object.
data("slingshotExample")
sds <- slingshot(rd, cl)
slingPseudotime(sds)
data("slingshotExample")
sds <- slingshot(rd, cl)
slingCurveWeights(sds)