R: Extract the Slingshot lineages

slingLineages {slingshot}

R Documentation

Extract the Slingshot lineages

Extract lineages (represented by ordered sets of clusters) from a SlingshotDataSet.

slingLineages(x)

## S4 method for signature 'SlingshotDataSet'
slingLineages(x)

## S4 method for signature 'SingleCellExperiment'
slingLineages(x)

`x`	an object containing `slingshot` output.

the list of lineages, represented by ordered sets of clusters.

SlingshotDataSet: returns the list of lineages, represented by ordered sets of clusters from a SlingshotDataSet object.
SingleCellExperiment: returns the list of lineages, represented by ordered sets of clusters from a SingleCellExperiment object.

data("slingshotExample")
sds <- getLineages(rd, cl)
slingLineages(sds)

[Package slingshot version 1.0.0 Index]