MotifSetup-class        MotifSetup Reference Class
PlotSetArray-class      PlotSetArray Reference Class
PlotSetList-class       PlotSetList Reference Class
PlotSetPair-class       PlotSetPair Reference Class
add_local_file          Add files to local SeqPlots installation
getPlotSetArray         Process genomic signal
getREF                  Get reference genome
import.narrowPeak       Import function for narrowPeak format
plot                    Generic plot function for SeqPlots package
                        calsses
plotAverage             Create the average plot
plotHeatmap             Plot heatmap with optional clustering
run                     SeqPlots innitiation
seqplots                SeqPlots - An interactive tool for visualizing
                        NGS signals and sequence motif densities along
                        genomic features using average plots and
                        heatmaps.
seqplots-generic        SeqPlots generic methods
