filter {scater}R Documentation

Return SingleCellExperiment with cells matching conditions.

Description

Subsets the columns (cells) of a SingleCellExperiment based on matching conditions in the rows of colData(object).

Usage

filter(object, ...)

## S4 method for signature 'SingleCellExperiment'
filter(object, ...)

Arguments

object

A SingleCellExperiment object.

...

Additional arguments to be passed to dplyr::filter to act on colData(object).

Value

An SingleCellExperiment object.

Examples

data("sc_example_counts")
data("sc_example_cell_info")
example_sce <- SingleCellExperiment(
assays = list(counts = sc_example_counts), 
colData = sc_example_cell_info)
example_sce_treat1 <- filter(example_sce, Treatment == "treat1")
[Package scater version 1.10.1 Index]