R: Arrange columns (cells) of a SingleCellExperiment object

arrange {scater}

R Documentation

Arrange columns (cells) of a SingleCellExperiment object

Description

The SingleCellExperiment returned will have cells ordered by the corresponding variable in colData(object).

Usage

arrange(object, ...)

## S4 method for signature 'SingleCellExperiment'
arrange(object, ...)

Arguments

`object`	A `SingleCellExperiment` object.
`...`	Additional arguments to be passed to `dplyr::arrange` to act on `colData(object)`.

Value

An SingleCellExperiment object.

Examples

data("sc_example_counts")
data("sc_example_cell_info")
example_sce <- SingleCellExperiment(
assays = list(counts = sc_example_counts), 
colData = sc_example_cell_info)
example_sce <- arrange(example_sce, Cell_Cycle)

[Package scater version 1.10.1 Index]