| rnaseqcomp-class {rnaseqcomp} | R Documentation |
This is a S4 class to organize data ready for benchmark summarization.
There are 5 S3 objects inside this class. quantData documents a
list of data matrices ready for evaluation by functions plotSD,
plotNE, plot2TX or plotROC. condInfo is a
factor corresponding to columns of quantData matrices, indicating
to which cell lines each sample belongs. repInfo is a factor
corresponding to columns of quantData matrices indicating replicate
information. repInfo is a legacy from previous versions, and
doesn't have too much meanings in current version. refMed is the
median log2 signal of calibration references. scaler is a number
that point to the median log2 signal of reference pipeline. refMed
and scaler were used to calibrate and generate quantData.