rTANDEM-package	rTANDEM-package
AddTaxon	parameters
addTaxon	parameters
GetDegeneracy	accessors
getDegeneracy	accessors
GetParamFromXML	converters
getParamFromXML	converters
GetPeptides	accessors
getPeptides	accessors
GetProteins	accessors
getProteins	accessors
GetResultsFromXML	converters
getResultsFromXML	converters
GetTaxoFromXML	converters
getTaxoFromXML	converters
ms2.plot	visualizers
print.rTParam	parameters
rTANDEM	tandem
rtandem	tandem
rTParam	parameters
rTResult-class	rTResult-class
rTResult_s-class	rTResult-class
rTTaxo	parameters
SetParamDefault	parameters
setParamDefault	parameters
SetParamIonTrap	parameters
setParamIonTrap	parameters
SetParamOrbitrap	parameters
setParamOrbitrap	parameters
SetParamPTMTreeSearch	parameters
setParamPTMTreeSearch	parameters
SetParamQuadTof05da	parameters
setParamQuadTof05da	parameters
SetParamQuadTof100ppm	parameters
setParamQuadTof100ppm	parameters
SetParamValue	parameters
setParamValue	parameters
tandem	tandem
WriteParamToXML	converters
writeParamToXML	converters
WriteTaxoToXML	converters
writeTaxoToXML	converters
