Package: pcaExplorer
Type: Package
Title: Interactive Visualization of RNA-seq Data Using a Principal
        Components Approach
Version: 2.8.1
Date: 2018-10-22
Authors@R: c(person("Federico", "Marini", role = c("aut", "cre"), 
        email ="marinif@uni-mainz.de", 
        comment = c(ORCID = '0000-0003-3252-7758')))
Maintainer: Federico Marini <marinif@uni-mainz.de>
Description: This package provides functionality for interactive
        visualization of RNA-seq datasets based on Principal Components
        Analysis. The methods provided allow for quick information
        extraction and effective data exploration. A Shiny application
        encapsulates the whole analysis.
License: MIT + file LICENSE
LazyData: TRUE
Imports: DESeq2, SummarizedExperiment, GenomicRanges, IRanges,
        S4Vectors, genefilter, ggplot2 (>= 2.0.0), d3heatmap, scales,
        NMF, plyr, topGO, limma, GOstats, GO.db, AnnotationDbi, shiny
        (>= 0.12.0), shinydashboard, shinyBS, ggrepel, DT, shinyAce,
        threejs, biomaRt, pheatmap, knitr, rmarkdown, tidyr, grDevices,
        methods
Suggests: testthat, BiocStyle, airway, org.Hs.eg.db
URL: https://github.com/federicomarini/pcaExplorer,
        https://federicomarini.github.io/pcaExplorer/
BugReports: https://github.com/federicomarini/pcaExplorer/issues
biocViews: ImmunoOncology, Visualization, RNASeq, DimensionReduction,
        PrincipalComponent, QualityControl, GUI, ReportWriting
VignetteBuilder: knitr
RoxygenNote: 6.1.0
Encoding: UTF-8
NeedsCompilation: no
Author: Federico Marini [aut, cre]
git_url: https://git.bioconductor.org/packages/pcaExplorer
git_branch: RELEASE_3_8
git_last_commit: 7d38a3c
git_last_commit_date: 2019-01-04
Date/Publication: 2019-01-04
Packaged: 2019-01-05 03:57:44 UTC; biocbuild
Built: R 3.5.2; ; 2019-01-05 12:29:44 UTC; windows
