5d1480a1ed87589765e31fc39bdc60d2 *CITATION
ba11dfd3bbd52148c02c865ce55a22a1 *DESCRIPTION
5aa322d25948c7a1f01eef0bb55f0822 *INDEX
822a24675c1623bc91b98c7287ee81e6 *Meta/Rd.rds
429724b30f0322e2d56778dd130867d3 *Meta/features.rds
cae2a5ec8124915f64b1e70039cb687f *Meta/hsearch.rds
8f1bba7ac5779408a956c2c8412e1ebf *Meta/links.rds
0bd7453371234e0fea7e147d7ba0fe98 *Meta/nsInfo.rds
bb1ffa74c620e0885d31f0546f991375 *Meta/package.rds
d1583e37565ceb3fe4a5e0aee3e4d0ce *Meta/vignette.rds
3723122c751a12180441c5026118876a *NAMESPACE
ad2526eb4d4bcabb6fc4b978e146d97a *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/paxtoolsr
550accec521ec94f971d6c9f2b51efc2 *R/paxtoolsr.rdb
8cde7de70620f777b4f57f5f1d5a5c95 *R/paxtoolsr.rdx
6d04e35e1764075bf908f2d025c220e4 *doc/index.html
925ed8fdd8b886f23a2cb43031504e6b *doc/using_paxtoolsr.R
c4d03ddea5f82fff3813233d12ec9070 *doc/using_paxtoolsr.Rmd
9ca54133a0bfdb4432339c7db5b4c498 *doc/using_paxtoolsr.html
57094ba294cbb6fd68b5e557da2bad9b *extdata/10523676-compact.xml
54ab0ba22a9a4c822d8e575990c07331 *extdata/REACT_12034-3.owl
befab228b4b455dad710c9e1580e3fb1 *extdata/biopax3-short-metabolic-pathway.owl
2b5dfeb2ea9bfec99bd6dc4aba646b89 *extdata/dna_replication.owl
0023a3039a2f2658bb8c7885077cbbd5 *extdata/pathways.txt.gz
5a160fa41a75c7c756c2f727535d9d08 *extdata/raf_map_kinase_cascade_reactome.owl
d9802077f40d32d53da69dbbc116d215 *extdata/sif_color_code.txt
7ee52a8e1359ac99e0638777b1e0039e *extdata/tca_cycle.sif
befab228b4b455dad710c9e1580e3fb1 *extdata/test_biopax.owl
360e4ae65db08fb3a419806d3947666b *extdata/test_edgelist.txt
720f4a025c3d8906980885ca1ab33f8b *extdata/test_gsea.gmt
c93c59f7bd8a7d4aafcee2da89ace6f5 *extdata/test_gsea_1.gmt
01d9c9d6de8696250b58d6181392250e *extdata/test_sbgn.xml
7ee52a8e1359ac99e0638777b1e0039e *extdata/test_sif.txt
55bd7efeea626b96b3f332fc3e58d89f *extdata/test_sif_shortestPath.txt
a91fd992f44498a410ba6fb4af7496d0 *extdata/test_sifnx.txt
d4a9f3016f63dd1bddb9cce026810563 *extdata/test_sifnx2.txt
3e2b04768807dcec38b24914ebe7640c *extdata/test_sifnx_250.txt
42d032414c1a6fdeea0fb9e1719d6b6f *extdata/test_sifnx_sm.txt
4f122bc4d29b457e781ab7beaef257b7 *help/AnIndex
9333b3520b34c5d23830abb9649c6a76 *help/aliases.rds
721a2a6ae25e018cb9170e2dc5e8c4a3 *help/paths.rds
536ab900e6144ee8fe2624a6f21be86b *help/paxtoolsr.rdb
7754cb14fb1e6e9390587ba1df9c7ba1 *help/paxtoolsr.rdx
4505ea435f57f1599c345af804ad1135 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
170a83950dd62eecbe10228c42a63e36 *html/addAttributeList.html
0b236fde318e84d2d32f37157f14ceab *html/convertDataFrameListsToVectors.html
59fa890a68c567b2b73b61a3d93aef4f *html/convertIds.html
56cbeda3276f1e3d84216a962c2d46f2 *html/convertSifToGmt.html
f2323c0f88f65528dc58202354bb37a4 *html/downloadFile.html
3251ca758e5cd72cdfe382550c3523d7 *html/downloadPc2.html
70abc7da5d69dc425504027b96e17977 *html/downloadSignedPC.html
9ec32338364b8b7b756f6e8a0ebcd3e6 *html/fetch.html
e4ed039c63fc91b2ab86d1d3099d4768 *html/filterSif.html
0fb60d33ca3a9c7e63194ef0a475c7c1 *html/getCacheFiles.html
e7859139d4daebcc81819b922db018c3 *html/getErrorMessage.html
1f7f1eacc66d104f9dc834dad57b020b *html/getNeighbors.html
59343ddef056be7ba7b7d3a7da032a23 *html/getPc.html
30016d426f0d92ff62acbe911b8b735a *html/getPcDatabaseNames.html
104415b96051b00d9c94b203564d9e96 *html/getPcUrl.html
5230d60c4b999e1aa539b53f534da5df *html/getShortestPathSif.html
1e4dfa2ced7062be5973afb0bd8d4146 *html/getSifInteractionCategories.html
f39a5ce2720b7cca40d1e344cda9dfd1 *html/graphPc.html
dcddbbd581064366e90e9202d9aeffbe *html/integrateBiopax.html
03ef9b6b96eb3d99bdfb9b74bcc1b5cd *html/loadSifInIgraph.html
074fae13f5c362072a826c3538041cc5 *html/mapAttributes.html
27219820e247280e6b74dadca22e165d *html/mapValues.html
459ff5fc78f24e5fe2544f62bc19604f *html/mergeBiopax.html
57debc26fc478306be2b5f735b5c4d6c *html/pcDirections.html
4c87d51da37b46499eeeea7e282dd3ff *html/pcFormats.html
b5f2b40e5ba9282942c726928e52a4bc *html/pcGraphQueries.html
d6b110b1c18e029c44a16fc0c2832f07 *html/processPcRequest.html
650403d2ce6ce63c6d57762d96c15398 *html/readBiopax.html
695ae5e2faa7c2f8b89cbe504fb014bd *html/readGmt.html
95ad1406906979dfc2fcd0bda8ebaaa8 *html/readPcPathwaysInfo.html
d8a9c9e5d6f00abccf02a3b6d93a8a2d *html/readSbgn.html
f7c56da6db77f8cae4116410f6d1bacf *html/readSif.html
a42e1ee75dfbdb2c88f61c702be3937a *html/readSifnx.html
146a2b5568646d3aa8872bb332addea2 *html/searchListOfVectors.html
d4ff6223e6cb704d700b951c26cbbfab *html/searchPc.html
eb72fdfd50fee3f03afaf0455b96bf25 *html/splitSifnxByPathway.html
773065346336f774c51af02311976d6e *html/summarize.html
1a7dda06a9b1b90adefa6a1b477b9daa *html/summarizeSif.html
b77252fd7085a36cc07a9ace2d4762cb *html/toCytoscape.html
1011fabcf53b4ac8a43a37aea5b55745 *html/toGSEA.html
245fda29cdaddb4d2e6382dfd2bb71b2 *html/toLevel3.html
1a8bc0849d97735862a688d2e0936335 *html/toSBGN.html
0bf40ceae657501ef95add1f33157055 *html/toSif.html
02503b33828c66301ed2e174e48e0914 *html/toSifnx.html
91b1c075f6d06ca01266e4369d06cf73 *html/topPathways.html
aedc5fb763ee11d4ea03762adb194753 *html/traverse.html
61dbbd23739df4c66ffed09004509ce5 *html/validate.html
10b770f4bf107c3605328e762b505f57 *ignore/convertSifnxIds.R
ed2e681553db936079aa21796b1d0a89 *ignore/convertToDF.R
daaee6df65df384e7168e8c0577eceb5 *ignore/convertToDT.R
fb5b7f7caef5743309a18afbc9b3a2ad *ignore/convertToDataFrameWithListOfVectors.R
33ea73ea94104e9e72ec060d2470d216 *ignore/del.txt
11a9c3f3e62bbb6f2385c98b78e3b469 *ignore/extractIds.R
0477d290cc88cb8983762f205f7f9ee0 *ignore/readSifnxSmall.R
7b853239982cd3f311b6bbb57e4fd28e *java/paxtools-4.3.1.jar
32810134c877218a48464ea8a46488eb *paxtoolsNotes.txt
