| geneSetName-methods {npGSEA} | R Documentation |
geneSetName ~~This function returns the name of the corresponding GeneSet
or a list of names for a GeneSetCollection.
This method is applicable for all three approximation methods.
geneSetName(object)
object |
An object of type |
signature(object = "npGSEAResultNorm")Returns a the name of
the gene set from a npGSEAResultNorm object
signature(object = "npGSEAResultBeta")Returns a the name of the
gene set from a npGSEAResultBeta object
signature(object = "npGSEAResultChiSq")Returns a the name of
the gene set from a npGSEAResultChiSq object
signature(object = "npGSEAResultNormCollection")Returns a list of
the names of the gene sets from a npGSEAResultNormCollection objects (1 for each set)
signature(object = "npGSEAResultBetaCollection")Returns a list of
the names of the gene sets from a npGSEAResultBetaCollection objects (1 for each set)
signature(object = "npGSEAResultChiSqCollection")Returns a list of the
names of the gene sets from a npGSEAResultChiSqCollection objects (1 for each set)
Jessica L. Larson
npGSEAResultNorm-class
set.seed(15)
yFactor <- as.factor( c(rep("treated", 5), rep("control", 5)) )
xData <- matrix(data=rnorm(length(letters)*10) ,nrow=length(letters), ncol=10)
rownames(xData) <- letters
geneSetABC15 <- GeneSet(geneIds=letters[1:15], setName="setABC15")
res <- npGSEA(x = xData, y = yFactor, set = geneSetABC15)
geneSetName (res)