| generateDNAStringSet {motifcounter} | R Documentation |
This function generates a DNAStringSet-object of the given individual sequence lengths by sampling from the background model.
generateDNAStringSet(seqlen, bg)
seqlen |
Integer-valued vector that defines the lengths of the
individual sequences. For a given DNAStringSet,
this information can be retrieved using |
bg |
A Background object |
A DNAStringSet object
# Load sequences
seqfile = system.file("extdata", "seq.fasta", package = "motifcounter")
seqs = Biostrings::readDNAStringSet(seqfile)
# Load background
bg = readBackground(seqs, 1)
# Generate random sequences of various lengths
motifcounter:::generateDNAStringSet(10:50, bg)