# Generated by roxygen2: do not edit by hand

export(abundances)
export(aggregate_taxa)
export(associate)
export(baseline)
export(bimodality)
export(boxplot_abundance)
export(core)
export(core_abundance)
export(core_members)
export(coverage)
export(divergence)
export(diversities)
export(dominance)
export(evenness)
export(gktau)
export(global)
export(group_age)
export(group_bmi)
export(heat)
export(hotplot)
export(inequality)
export(intermediate_stability)
export(log_modulo_skewness)
export(low_abundance)
export(map_levels)
export(merge_taxa2)
export(meta)
export(neat)
export(neatsort)
export(noncore_abundance)
export(noncore_members)
export(plot_atlas)
export(plot_composition)
export(plot_core)
export(plot_density)
export(plot_frequencies)
export(plot_landscape)
export(plot_regression)
export(plot_taxa_prevalence)
export(plot_tipping)
export(potential_analysis)
export(prevalence)
export(quiet)
export(rare_members)
export(rarity)
export(read_biom2phyloseq)
export(read_csv2phyloseq)
export(read_mothur2phyloseq)
export(read_phyloseq)
export(remove_samples)
export(remove_taxa)
export(richness)
export(summarize_phyloseq)
export(taxa)
export(time_normalize)
export(time_sort)
export(top_taxa)
export(transform)
export(variable_members)
export(write_phyloseq)
importFrom(dplyr,"%>%")
importFrom(dplyr,arrange)
importFrom(dplyr,do)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,coord_cartesian)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_density)
importFrom(ggplot2,geom_histogram)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_linerange)
importFrom(ggplot2,geom_path)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_polygon)
importFrom(ggplot2,geom_smooth)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,geom_violin)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,position_jitter)
importFrom(ggplot2,scale_alpha_continuous)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_colour_gradient2)
importFrom(ggplot2,scale_fill_gradient)
importFrom(ggplot2,scale_fill_gradientn)
importFrom(ggplot2,scale_size)
importFrom(ggplot2,scale_size_manual)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,scale_x_log10)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,scale_y_discrete)
importFrom(ggplot2,scale_y_log10)
importFrom(ggplot2,stat_density2d)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_set)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(phyloseq,"otu_table<-")
importFrom(phyloseq,"sample_data<-")
importFrom(phyloseq,"tax_table<-")
importFrom(phyloseq,"taxa_names<-")
importFrom(phyloseq,distance)
importFrom(phyloseq,estimate_richness)
importFrom(phyloseq,get_taxa)
importFrom(phyloseq,get_variable)
importFrom(phyloseq,import_biom)
importFrom(phyloseq,merge_phyloseq)
importFrom(phyloseq,merge_taxa)
importFrom(phyloseq,nsamples)
importFrom(phyloseq,ntaxa)
importFrom(phyloseq,ordinate)
importFrom(phyloseq,otu_table)
importFrom(phyloseq,parse_taxonomy_default)
importFrom(phyloseq,phyloseq)
importFrom(phyloseq,prune_samples)
importFrom(phyloseq,prune_taxa)
importFrom(phyloseq,psmelt)
importFrom(phyloseq,sample_data)
importFrom(phyloseq,sample_names)
importFrom(phyloseq,sample_sums)
importFrom(phyloseq,tax_glom)
importFrom(phyloseq,tax_table)
importFrom(phyloseq,taxa_are_rows)
importFrom(phyloseq,taxa_names)
importFrom(phyloseq,taxa_sums)
importFrom(reshape2,melt)
importFrom(stats,aggregate)
importFrom(stats,as.dist)
importFrom(stats,coef)
importFrom(stats,cor)
importFrom(stats,cor.test)
importFrom(stats,density)
importFrom(stats,dist)
importFrom(stats,dnorm)
importFrom(stats,frequency)
importFrom(stats,hclust)
importFrom(stats,kernel)
importFrom(stats,lm)
importFrom(stats,loess)
importFrom(stats,loess.control)
importFrom(stats,median)
importFrom(stats,na.fail)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,pnorm)
importFrom(stats,predict)
importFrom(stats,quantile)
importFrom(stats,rnorm)
importFrom(stats,sd)
importFrom(stats,time)
importFrom(tidyr,separate)
importFrom(utils,capture.output)
importFrom(utils,flush.console)
importFrom(utils,head)
importFrom(utils,read.csv)
importFrom(utils,read.table)
importFrom(utils,tail)
importFrom(utils,write.csv)
importFrom(vegan,decostand)
importFrom(vegan,fisher.alpha)
importFrom(vegan,metaMDS)
importFrom(vegan,scores)
importFrom(vegan,vegdist)
importFrom(vegan,wascores)
