10aa55191cbc0781f06a35518262838e *CITATION
c8aa5f6809fc9cc31bd9028956ed0737 *DESCRIPTION
cfbb0bcd950041b80d96999eca03daa1 *INDEX
db8f669a2ad4c714c669563fe62f3f07 *Meta/Rd.rds
8c62aa5c051af438fa8da542dc13bf93 *Meta/data.rds
429724b30f0322e2d56778dd130867d3 *Meta/features.rds
e7ac25f1f9ac368483964e777dbd3f2d *Meta/hsearch.rds
b330272bc371af55ef1a86d4a9f82460 *Meta/links.rds
2f192c55b14257ca35d0766c789df1e1 *Meta/nsInfo.rds
2a36d068f8ae66580924949bf81d61c5 *Meta/package.rds
0e20d5c81afca49e32aec2127aeb22b0 *Meta/vignette.rds
8a0639ef353d4e824dd94d4937d66650 *NAMESPACE
139af028e51e6ea9cdcd14d794274958 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/methylKit
c2d1da00e303bf46eb3d3a1c5e2b7b4f *R/methylKit.rdb
ef611fcbff0b52c6b533b4ccf4a6aceb *R/methylKit.rdx
a40ac0cf8d6f579994ec0d0e7e44b9bf *data/methylKit.RData
e3276ea257b41311a0c3d523aeb6a830 *doc/index.html
d1f22258dac814a8c1dbe4313dd7fcd0 *doc/methylKit.R
6251cdfa69ba05828f727f9c2726c675 *doc/methylKit.Rmd
d573b1a3b0a6fd1a83f02a2bfe545eb7 *doc/methylKit.html
9f314284ccf1d954a2150d290362033c *extdata/control1.myCpG.txt
c2e87d0e9bf5274c687944cf4fc1b610 *extdata/control2.myCpG.txt
16bc04a2984590a5272c8c9895b6752e *extdata/cpgi.hg18.bed.txt
df0eb6952dc30be700238707958e73bd *extdata/ctrl.bismark_paired_end.sorted.bam
f8b1f2c63f34894df0596b93fd4cc980 *extdata/ctrl.bismark_paired_end.sorted.wh.sam
06ca43dca22648465f17c4f7ab1f6eb1 *extdata/ctrl1.txt.bgz
da59758faa641149dc936ccd1f7d517c *extdata/ctrl2.txt.bgz
e78640ae909e8d97b0fd81b8decfd97a *extdata/generic1.CpG.txt
f8c62c8a9102aee771305f2bc5ba526f *extdata/refseq.hg18.bed.txt
e45fad29dc4f1a3cbaa3a38209b248e0 *extdata/test.bismark_single_end.sorted.bam
069812356c00d6850567db5a6dfc4eb6 *extdata/test.bismark_single_end.sorted.wh.sam
f9a886656e88c673565abc8573ab7541 *extdata/test.fastq_bismark.sorted.min.sam
ed84e619d028dc221cb9b1d2dbe196cb *extdata/test.fastq_bismark.unsorted.min.sam
3fe084e1e464ba316df2a7e20258a87b *extdata/test.fastq_bismark.unsorted_chr.min.sam
320e8a27eb17f29cbd8e5e354265451a *extdata/test1.myCpG.txt
f84407c737c0ac0789cbdc6d15702104 *extdata/test1.txt.bgz
9ec00e7a201362efa9dd460e689e2f53 *extdata/test1_test2_ctrl1_ctrl2.txt.bgz
aa5e23946c668bae0377752e992e3f31 *extdata/test1_test2_ctrl1_ctrl2_diffMeth.txt.bgz
c4992c21174efc8df3129c70f9f65789 *extdata/test2.myCpG.txt
9a9db3f07bfeeac83a815dc02793208a *extdata/test2.txt.bgz
aef448e1c62863edaab6067c982d98bc *help/AnIndex
21e102e6854a339a9a8e0ac9a198589b *help/aliases.rds
ba3d7fbd84fc00146b2863977c4273d4 *help/methylKit.rdb
5433e99d027261425480a4370308fd2e *help/methylKit.rdx
908040a275e12f96b03d7128c7478ead *help/paths.rds
83f4a142f272bf4a1ed609bd882c1e01 *html/00Index.html
50fb4d5e1dd694cc72d9eead940eac4a *html/PCASamples-methods.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
2ee8c78640d5c9bc36f3d95190e30f2a *html/adjustMethylC.html
4ebd62625f82ce982e6fe875a25da6fe *html/assocComp-methods.html
1ab18da2519716c6efa6ec48fc76e8ed *html/bedgraph-methods.html
ba8f476f64bc3cdd268bcb01fac71447 *html/calculateDiffMeth-methods.html
cc1398d63defaef605496546174f81b4 *html/calculateDiffMethDSS-methods.html
8b851df75bdf1e90386fc55909a6a1f9 *html/clusterSamples-methods.html
4115367411671e78621b610722c9a88f *html/dataSim-methods.html
c41ccba767fe611fda3aba7d84ff0ad2 *html/diffMethPerChr-methods.html
ba2e0eac25eb78e94b6ea824b244965a *html/extract-methods.html
0b49138af5ccfd7a456d7e5b306dbb1d *html/filterByCoverage-methods.html
eb478a9a733df2da67c3a7e40053c028 *html/genomation-deprecated.html
39002aa6a398ab4e4c181f7f824920da *html/getAssembly-methods.html
624c0efc1cb5e45845f0aecb210fa9f8 *html/getContext-methods.html
b1e125a551e90f03ef31c54d2e1bf134 *html/getCorrelation-methods.html
2e474b8f2e87e6bc347a4456db3e1ae8 *html/getCoverageStats-methods.html
19892586ab8a6cac310b058ed368ff08 *html/getDBPath-methods.html
f5c342db4fa912a4a2c81493b17b213a *html/getData-methods.html
21d2cd919f945d5f3b41f234f00f1cf5 *html/getMethylDiff-methods.html
705e0bec936ae96e976634e1b2791466 *html/getMethylationStats-methods.html
24d587d479c3f1a88512b2ba6ccb6ff1 *html/getSampleID-methods.html
ae083bb773b493536336591bfcbe1569 *html/getTreatment-methods.html
92602b2569df945b8dd19bf0d8eb1bf5 *html/joinSegmentNeighbours.html
949885a9eff65b6f9f07660b215b2982 *html/makeMethylDB-methods.html
be18a0e3681109829197273e4e8ca01a *html/methRead-methods.html
1765157d287e8404488acfcb104f4642 *html/methSeg.html
f88bff6c636e9e266bab3074f9d07fc4 *html/methSeg2bed.html
69ed055e6abef2085336e38c2ad0242f *html/methylBase-class.html
48477a5ead603185dad59428207f80f9 *html/methylBase.obj.html
d599da0d936dc4d5cd4ad753ef36e571 *html/methylBaseDB-class.html
00d94e10d7c990f08478144d5c7e32c8 *html/methylDiff-class.html
88932c9bb14397ce21a04ac5b453fa42 *html/methylDiff.obj.html
f671221f3e28daf6f14c472eb7a35481 *html/methylDiffDB-class.html
a48a7904d84ff21956c1db177456c964 *html/methylRaw-class.html
9e5df938e1227531f3e2f8d0f7ba0d70 *html/methylRawDB-class.html
74bee677bd1fed1e7165ac1843d489a3 *html/methylRawList-class.html
d88567e6ad8b3076c69962209836addd *html/methylRawList.obj.html
83b02a7175d6044f71c7efbf43bae8d1 *html/methylRawListDB-class.html
ba484c1f08c5e156dc84adb18f50b73f *html/normalizeCoverage-methods.html
b8dddc5aab58ba593aba2ba548510476 *html/percMethylation-methods.html
ab4665b90bf8656af0f77cacc3b35a81 *html/pool-methods.html
3d5d99bc59aba2bf40ed0b3d4250ef42 *html/processBismarkAln-methods.html
7d499438030ccf05572a0a282589c093 *html/reconstruct-methods.html
9a16160a27fda6caaa906765bbb5ed7b *html/regionCounts.html
f46412a6e727ad78104ccadf62e9f238 *html/removeComp-methods.html
034e215f5ffd9f39ccaf36282ff6e035 *html/reorganize-methods.html
c24905f32def12f9f4cedd75e4b64b86 *html/select-methods.html
95e46e57b76980d3222ffad8812c3626 *html/selectByOverlap-methods.html
9996885ba00a87f4c01d7015614b2b52 *html/show-methods.html
a8e1ac28611f3c2378a3b21ec1f01c35 *html/tileMethylCounts-methods.html
e429c41aa6d1c16149fefdfb846f2a30 *html/unite-methods.html
ee4db4a4974c875e543db988c3fb6203 *html/updateMethObject.html
d6f74c7a41abaa174284bf955f6848d0 *libs/i386/methylKit.dll
3e02e6d0d4417436ebdf008f41021387 *libs/x64/methylKit.dll
aef8d97d039ef8f54caea88566a96131 *methylKit_logo.png
ba863745f5d180ba1104cc26edf78add *scripts/create.data.R
