| ldblock-package {ldblock} | R Documentation |
Define data structures for linkage disequilibrium measures in populations.
The DESCRIPTION file:
| Package: | ldblock |
| Title: | data structures for linkage disequilibrium measures in populations |
| Version: | 1.12.1 |
| Author: | VJ Carey <stvjc@channing.harvard.edu> |
| Description: | Define data structures for linkage disequilibrium measures in populations. |
| Suggests: | RUnit, BiocGenerics, knitr |
| Imports: | Matrix, snpStats, erma, VariantAnnotation, GenomeInfoDb, Rsamtools, GO.db, GenomicFiles (>= 1.13.6), BiocGenerics (>= 0.25.1) |
| Depends: | R (>= 3.1), methods, Homo.sapiens |
| Maintainer: | VJ Carey <stvjc@channing.harvard.edu> |
| License: | Artistic-2.0 |
| LazyLoad: | yes |
| BiocViews: | genetics, SNP, GWAS, LinkageDisequilibrium |
| VignetteBuilder: | knitr |
| git_url: | https://git.bioconductor.org/packages/ldblock |
| git_branch: | RELEASE_3_8 |
| git_last_commit: | 0d7c6a0 |
| git_last_commit_date: | 2019-04-03 |
| Date/Publication: | 2019-04-03 |
Index of help topics:
downloadPopByChr download hapmap resource with LD estimates
expandSnpSet Given a set of SNP identifiers, use LD to
expand the set to include linked loci
hmld import hapmap LD data and create a structure
for its management
ldByGene obtain LD statistics in region specified by a
gene model
ldblock-package data structures for linkage disequilibrium
measures in populations
ldstruct-class Class '"ldstruct"'
s3_1kg Create a URL referencing 1000 genomes content
in AWS S3
VJ Carey <stvjc@channing.harvard.edu>
Maintainer: VJ Carey <stvjc@channing.harvard.edu>
# see vignette