46b5ced3517b929ab2fe4cae253054ed *CITATION
eb7ddbf4d71692699a3011b766baf659 *DESCRIPTION
a27543e4f018e7b35b2638ed8fdb14f4 *INDEX
a035f7e94ee4749e805ee666b0378940 *Meta/Rd.rds
c87f49c3c5a36f0e3a0da69c1ff1e674 *Meta/data.rds
77a30dbd9a48297ae6e6ef2194a95267 *Meta/features.rds
9705f2fd2844ee8d7ef9402ea38549ab *Meta/hsearch.rds
77fbfb5e1cf83d38861e4e03ee3be9b5 *Meta/links.rds
d7cc30f58cc8ec636274af0ba49165b4 *Meta/nsInfo.rds
91f7c6474a43235606dc4acf8d20d533 *Meta/package.rds
e3576d6be8c7e12b168e52fcf4bf3603 *Meta/vignette.rds
21d7f372069ba69a1a34e655352e3d04 *NAMESPACE
2507a5a02ee2af6b5995fb68b830916b *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/isobar
f3dc32f48ed56ce795b75fc60bef83b9 *R/isobar.rdb
ea235e069e0fceaf3e2753ff219d280b *R/isobar.rdx
c7a5a70ebdebbb43c2e1ca9d1b0adee9 *data/datalist
b8b88836959bc4075f53f0c451dfe60b *data/ib_phospho.rda
0958cc4c886c489dda421ade8b7bddab *data/ibspiked_set1.rda
4a6ea3178279aefddcf6eb26f500e201 *data/ibspiked_set2.rda
20790378db1e8fc09a6ec329b91f2954 *data/noise.model.hcd.rda
163a311cc92f83bdf9f4c42e9128c9c5 *doc/index.html
3657e0dbdcb8fc8951e2fe604c35be02 *doc/isobar-devel.R
00750d7e0d90fea9eb3f348cb9735e75 *doc/isobar-devel.Rnw
47e28ba110dcd2972e8adb74d894177e *doc/isobar-devel.pdf
138dec290f8cf6f67c252ca3c007dd16 *doc/isobar-ptm.R
314da331a6a3811b2af10802037391c8 *doc/isobar-ptm.Rnw
93677ec495ed32b1082f0a03508d618f *doc/isobar-ptm.pdf
9a8eca9752762ff7486109e91215953c *doc/isobar-usecases.R
545d3ef59ef5f85f4b4da438f31e3e86 *doc/isobar-usecases.Rnw
9ac24529634f4c586cc93b8675ec9f0f *doc/isobar-usecases.pdf
ff99a39074b7ca848618af2802a7cb15 *doc/isobar.R
0286bb554d231774371cc1860a6f9e6a *doc/isobar.Rnw
7ab4931f69ece282cfa8193b4fb8af9e *doc/isobar.pdf
67db5bcb1b2f3e7f10d8ac9f0fa01df4 *help/AnIndex
b06f0fee8a4e736a58adc3a290c1843c *help/aliases.rds
a9704138ef51ecfaad4c2a1ef22b1ad6 *help/isobar.rdb
f434c83994abe79ce0e4dcfaa87146a2 *help/isobar.rdx
1e84cd18fa4e2c5ff60ff41b8cb35b8a *help/paths.rds
1a9d73beadda56cb1936e15622340629 *html/00Index.html
bacf0bca21ecb697263c5a74a40bb1da *html/IBSpectra-class.html
c0d5fa8db1165efbaa0e21d1146eb4b6 *html/NoiseModel-class.html
0e823f91fc7ededa4076e609c31846e2 *html/ProteinGroup-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
e363276723266a0bb0cc33432212a7d4 *html/TlsParameter-class.html
8d3b830eb395f469e2a3391aa3ad9b4f *html/Tlsd-class.html
d27d1587d21432a7666bb41380974193 *html/calc.delta.score.html
a9d3de71a30de532b3f9718d18dbbcfb *html/calc.startpos.html
a348bb7ccacb2165f1f27c78d6b494fd *html/calculate-pvalues.html
f9286dcb11daf0fc597b2a57880f324e *html/calculate.dNSAF.html
06dd08f6f8ad48558307a1713db93e20 *html/calculate.emPAI.html
d05070edd34fb4270b9d83b231b38499 *html/correct.peptide.ratios.html
1010c54027cb81bfeabefa5c0c26e350 *html/distr-methods.html
3ba606a3bf928d42937d67a63eb76e11 *html/fit-distr.html
7c9a62c5b5e41fcd8b63b3ce07957b29 *html/getPeptideModifContext.html
2f1b6a147619043f7099f7be3ba67fa2 *html/getPhosphoRSProbabilities.html
2a14d1ea7d46b6b2bc6a4e05c5792163 *html/getPtmInfo.html
98aae63430bd2580cf62412d5587bcce *html/groupMemberPeptides.html
7fadc0c9be1d180a266c26240705280f *html/human.protein.names.html
5f0a0f17c1e5a4189329d22034966067 *html/isobar-analysis.html
d9c6b4e4741d9403c244b2b0e2a28bfd *html/isobar-data.html
116aca919ab69aedcaf4a2d0f508642b *html/isobar-import.html
f4a07eae5368c4ec79265ef7384281b7 *html/isobar-log.html
b3f647754bf44bb3d559f7dcb867ef6d *html/isobar-package.html
5b38d90baa7396d3036438440e854027 *html/isobar-plots.html
142118a47f8f39e9d32d62f41bdfe8a6 *html/isobar-preprocessing.html
24bf9f37e4421b10faabdf619612043f *html/isobar-reports.html
437c1d770104db5f40b38f623b6e4c0f *html/maplot.protein.html
b50aa3dcb79741707e7719babcf36ba4 *html/number.ranges.html
941890cafb28c8493d685941374b2f6a *html/observedKnownSites.html
692855e378e9aa5290bcf57d7ab2d13a *html/peptide.count.html
0cf618f483fe5b29e3426417a5d88639 *html/proteinInfo-methods.html
0cdab0eba65f1dfb7fb049b5864ff5f2 *html/proteinNameAndDescription.html
45da7ee1a0ab29ae6a372e1d47ce6506 *html/ratio-summ.html
237eea57dadd0dc51fcf8c11f4856466 *html/ratiosReshapeWide.html
a645edfc2567208824e07a2416a166a1 *html/reporter.protein-methods.html
4914a80f9dde7eb557e8d8a1c9966671 *html/sanitize.html
40fff7772349dfb8684e6a33ec9a0eb6 *html/shared.ratios.html
f087a2b89efbd517878e672f764e5f3d *html/shared.ratios.sign.html
f389517dd9e162f2f07594470f615b2e *html/specificities.html
3a7ea64662fb49088472eb8da0347ed7 *html/spectra.count2.html
55ede55674cb4c6b7d85ad4d9a4de3b6 *html/subsetIBSpectra.html
8b1198d783f124d70448480d0eacc7a8 *html/utils.html
359d5bacd445324c6467e93567c4c74b *html/writeHscoreData.html
614d62d7914d02f329a42c343a91df08 *html/writeIBSpectra.html
716d7b0757874cf8599448f4bee9810e *pl/mascotParser.ini
2cca5297323fc2a74017ecd7aea853c7 *pl/mascotParser2.pl
2584f52a48c4f9aa1f66a70a34f49ff9 *pl/mascotParserDelta_defunct.pl
1fd85c5cbbfe521feea3c2b7b58e6d41 *pl/modifconv.csv
161d85c51a7f2283c3d0b84e0429d1d7 *pl/msgfpParser.R
3228f3eec6684af3e5723965b9ea74fa *pl/parsersConfig.xml
91010e7dc5499a269a1afdecbaf810b9 *pl/pidresParser.ini
b2220fae9a1b8bc8bc6e7e00ab96f2da *pl/pidresParser2.pl
4cf5076ba456ba392fa144b2ae228e3a *pl/psx2tab2.pl
005ecccf798ee34040ca6d6219f47ee9 *pl/tab2psx.pl
4f2a0927cd8506c4eea0beef0120e954 *pl/tab2xls.pl
b602208b7fa19d3eb2368c7ce7bb5dfa *pl/tab2xlsx.pl
ce7394b1801aa8b2e9c3f89466c5e55f *report/create_ibspectra.R
847bd2f19c315fcef0d86ee5183c9fc8 *report/create_meta_report.R
1bb294af0062a7fdeffce36e51d3ee23 *report/create_proteingroup.R
0b83a654ee337fa19cc2468561549a6d *report/create_reports.R
4ac135db1b729216469fbb60408af484 *report/isobar-analysis.Rnw
4e4331c28fbbcfb0001d3dab0d66ee14 *report/isobar-qc.Rnw
b29144b3a608f3d62852d92b59aff480 *report/meta-properties.R
67028806951e58f04939bf9d42db0032 *report/properties.R
b272169b767e3f91437feb211b3b1c53 *report/report-utils.tex
