rowDataPlotDefaults {iSEE}R Documentation

Row data plot defaults

Description

Create default settings for row data plot panels in the iSEE interface.

Usage

rowDataPlotDefaults(se, number)

Arguments

se

A SummarizedExperiment object.

number

An integer scalar, specifying the maximum number of row data plots that can be added to the interface.

Details

Parameters available to row data plots are:

YAxis:

Character, which column of rowData(se) should be shown on the y-axis? Defaults to the first entry of colData(se).

XAxis:

Character, what variable should be shown on the x-axis? Defaults to "None", but can also be "Row data" or "Feature name".

XAxisRowData:

Character, which column of rowData(se) should be shown on the x-axis if XAxis="Row data"? Defaults to the first entry of rowData(se).

All row-based parameters described in ?"iSEE point parameters" are applicable. All plot-based parameters described in ?"iSEE selection parameters" are applicable.

Value

A DataFrame containing default settings for parameters of each of number row data panels.

Author(s)

Aaron Lun

See Also

?"iSEE point parameters", ?"iSEE selection parameters"

Examples

example(SingleCellExperiment, echo=FALSE) # mock up 'sce'.
rowDataPlotDefaults(sce, n=1)
[Package iSEE version 1.2.4 Index]