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| iSEE-pkg-package | iSEE: interactive SummarizedExperiment/SingleCellExperiment Explorer |
| annotateEnsembl | Annotation via ENSEMBL database |
| annotateEntrez | Annotation via Entrez database |
| assay-method | ExperimentColorMap class |
| assayColorMap | ExperimentColorMap class |
| assayColorMap-method | ExperimentColorMap class |
| assayColorMap<- | ExperimentColorMap class |
| assayColorMap<--method | ExperimentColorMap class |
| assayNames-method | ExperimentColorMap class |
| assayNames<--method | ExperimentColorMap class |
| assays-method | ExperimentColorMap class |
| assays<--method | ExperimentColorMap class |
| availablePanelTypes | Available panel types |
| class:ExperimentColorMap | ExperimentColorMap class |
| colData-method | ExperimentColorMap class |
| colData<--method | ExperimentColorMap class |
| colDataColorMap | ExperimentColorMap class |
| colDataColorMap-method | ExperimentColorMap class |
| colDataColorMap<- | ExperimentColorMap class |
| colDataColorMap<--method | ExperimentColorMap class |
| colDataPlotDefaults | Column data plot defaults |
| colStatTableDefaults | Column statistics table defaults |
| customDataPlotDefaults | Custom data plot defaults |
| customStatTableDefaults | Custom statistics table defaults |
| ExperimentColorMap | ExperimentColorMap class |
| ExperimentColorMap-class | ExperimentColorMap class |
| featAssayPlotDefaults | Feature assay plot defaults |
| heatMapPlotDefaults | Heatmap defaults |
| isColorMapCompatible | Check compatibility between ExperimentColorMap and SummarizedExperiment objects |
| iSEE | iSEE: interactive SummarizedExperiment/SingleCellExperiment Explorer |
| iSEE point parameters | Point plot aesthetic parameters |
| iSEE selection parameters | Selection parameters |
| iSEE-pkg | iSEE: interactive SummarizedExperiment/SingleCellExperiment Explorer |
| jitterSquarePoints | Jitter points for categorical variables |
| jitterViolinPoints | Jitter points for categorical variables |
| lassoPoints | Find rows of data within a closed lasso |
| modeGating | App pre-configured to link multiple feature assay plots |
| panelCodes | Available panel types |
| panelTypes | Available panel types |
| redDimPlotDefaults | Reduced dimension plot defaults |
| rowData-method | ExperimentColorMap class |
| rowData<--method | ExperimentColorMap class |
| rowDataColorMap | ExperimentColorMap class |
| rowDataColorMap-method | ExperimentColorMap class |
| rowDataColorMap<- | ExperimentColorMap class |
| rowDataColorMap<--method | ExperimentColorMap class |
| rowDataPlotDefaults | Row data plot defaults |
| rowStatTableDefaults | Row statistics table defaults |
| sampAssayPlotDefaults | Sample assay plot defaults |
| subsetPointsByGrid | Subset points for faster plotting |
| synchronizeAssays | Synchronize assay colormaps to match those in a SummarizedExperiment |