| flowTrans-package {flowTrans} | R Documentation |
Maximum likelihood estimation of parameters for common flow cytometry data transformations.
| Package: | flowTrans |
| Type: | Package |
| Version: | 0.6.0 |
| Date: | 2010-03-25 |
| License: | Artistic-2.0 |
| LazyLoad: | yes |
| biocViews: | Bioinformatics, FlowCytometry |
| Depends: | flowCore, methods |
| Imports: | flowCore, methods, stats, flowViz, flowClust |
| Collate: | logicleTransformWrapper.R mclMultivArcSinh.R mclMultivBiexp.R mclMultivLinLog.R mclMultivBoxCox.R arcsinhTransformWrapper.R biexponentialTransformWrapper.R boxcoxTransform.R flowTrans.R linLog.R |
| Packaged: | 2010-03-25 16:49:03 UTC; finak |
| Built: | R 2.10.0; ; 2009-11-30 16:49:05 UTC; unix |
Index:
flowTrans Optimizing transformations for flow cytometry
data
Greg Finak <greg.finak@ircm.qc.ca>, Juan Manuel-Perez <jperez@ircm.qc.ca>, Raphael Gottardo <raphael.gottardo@ircm.qc.ca>
Maintainer: Greg Finak <greg.finak@ircm.qc.ca>
Finak G, Perez J M, Weng A, Gottardo R. Optimizing Transformations for Flow Cytometry. (Submitted)
#Load some data data(GvHD) #transform the first sample, forward and side scatter. result<-flowTrans(GvHD[[1]],"mclMultivArcSinh",colnames(GvHD[[1]])[1:2],n2f=FALSE,parameters.only=FALSE); plot(result$result); summary(result);