| bioc_integration {explorase} | R Documentation |
Functions loading and retrieving Bioconductor ExpressionSet objects to and from exploRase.
exp_loadExpressionSet(exprset, type = exp_entityType()) exp_phenoData(type = exp_entityType()) exp_featureData(type = exp_entityType()) exp_expressionSet(type = exp_entityType())
exprset |
The |
type |
The type of the biological entity (e.g. gene). |
To load a ExpressionSet instance into exploRase, call
exp_loadExpressionSet.
The function exp_expressionSet retrieves the
ExpressionSet representing the data stored in exploRase for the
given entity type. exp_phenoData and exp_featureData
retrieve only the phenoData and featureData components,
respectively.
For exp_expressionSet, an ExpressionSet.
For exp_phenoData, an AnnotatedDataFrame representing
the phenotype data (i.e. experimental design, see
exp_designFrame).
For exp_featureData, an AnnotatedDataFrame representing
the feature annotations (i.e. the entity info, see
exp_entityFrame).
Michael Lawrence
explorase for loading data and starting
exploRase in one call. exp_designFrame, exp_entityFrame,
exp_dataset, etc for retrieving data from exploRase.