exomeCopy-package	exomeCopy-package
compileCopyCountSegments	compileCopyCountSegments
copyCountSegments	copyCountSegments
countBamInGRanges	countBamInGRanges
exomeCopy	exomeCopy
ExomeCopy-class	ExomeCopy-class
exomecounts	exomecounts
generateBackground	generateBackground
getGCcontent	getGCcontent
negLogLike	negLogLike
plot,ExomeCopy,missing-method	ExomeCopy-class
plot.ExomeCopy	plot.exomeCopyObject
plotCompiledCNV	plotCompiledCNV
show,ExomeCopy-method	ExomeCopy-class
subdivideGRanges	subdivideGRanges
viterbiPath	negLogLike
