ERCC                    ERCC data
ERCCDef                 ERCCDef dataframe
ERCCMix1and2            ERCCMix1and2 dataframe
MET.CTL.countDat        Rat toxicogenomics count data
MET.CTL.totalReads      Rat toxicogenomics total read data
SEQC.Example            Example data from SEQC project for
                        erccdashboard analysis
UHRR.HBRR.arrayDat      UHRR and HBRR Illumina BeadArray data
UHRR.HBRR.countDat      UHRR and HBRR RNA-Seq Illumina count data
UHRR.HBRR.totalReads    UHRR and HBRR sample total read data
annotLODR               Annotate signal-abundance and ratio-abundance
                        plots with LODR
dynRangePlot            Produce signal-abundance plot to evaluate
                        dynamic range
erccROC                 Produce Receiver Operator Characteristic (ROC)
                        Curves and AUC statistics
estLODR                 Estimate Limit of Detection of Ratios (LODR)
est_r_m                 Estimate the mRNA fraction differences for the
                        pair of samples using replicate data
geneExprTest            Prepare differential expression testing results
                        for spike-in analysis
initDat                 Initialize the exDat list
maSignal                Generate MA plots with or without annotation
                        using LODR estimates
runDashboard            Run default erccdashboard analysis of ERCC
                        control ratio mixtures
saveERCCPlots           Save erccdashboard plots to a pdf file
