Accessors for AnnotParam class

Description

These functions and generics define 'accessors' (to get and set values) for AnnotParam objects within the easyRNASeq package. Implemented are:

• datasource

• type

Usage

datasource(object)
## S4 method for signature 'AnnotParam'
type(x)

Arguments

Value

The value of the corresponding slot.

Author(s)

Nicolas Delhomme

See Also

The AnnotParam class. The type and organism generics are imported from the BSgenome and Biostrings package, respectively.

Examples

library(curl)
invisible(curl_download(paste0("https://github.com/UPSCb/UPSCb/raw/",
                               "master/tutorial/easyRNASeq/Dmel-mRNA-exon-r5.52.gff3.gz"),
                        "Dmel-mRNA-exon-r5.52.gff3.gz"))

annot <- AnnotParam(datasource="Dmel-mRNA-exon-r5.52.gff3.gz")
# get the datasource Parameter
datasource(annot)