Data to run gene set analysis methods

Description

A list including the following components:

arrayData – a data.frame of dimension 119487 rows and 4 columns including P-values, SNP ids, position and chromosome for a GWAS experiment;

geneSets – a GeneSetCollection containing gene Entrez ids;

ldMat – a matrix of dimension 871 x 871 holding linkage disequilibrium values;

indepSNPs – a list containing 302 independent SNP ids;

Usage

geneSetAnalysis

Examples

    data(geneSetAnalysis)
    head(geneSetAnalysis$arrayData)