Package: countsimQC
Type: Package
Title: Compare Characteristic Features of Count Data Sets
Version: 1.0.1
Author: Charlotte Soneson
Maintainer: Charlotte Soneson <charlottesoneson@gmail.com>
Description: countsimQC provides functionality to create a comprehensive report 
    comparing a broad range of characteristics across a collection of count 
    matrices. One important use case is the comparison of one or more synthetic 
    count matrices to a real count matrix, possibly the one underlying the 
    simulations. However, any collection of count matrices can be compared.
License: GPL (>=2)
Encoding: UTF-8
Depends: R (>= 3.5)
Imports: rmarkdown (>= 0.9.5), edgeR, DESeq2 (>= 1.16.0), dplyr, tidyr,
        ggplot2, grDevices, tools, SummarizedExperiment, genefilter,
        DT, GenomeInfoDbData, caTools, randtests, stats, utils, methods
RoxygenNote: 6.1.0
Suggests: knitr, testthat
VignetteBuilder: knitr
biocViews: ImmunoOncology, Microbiome, RNASeq, SingleCell,
        ExperimentalDesign, QualityControl, ReportWriting,
        Visualization
Collate: 'calculateCorrelations.R' 'calculateDispersionsddsList.R'
        'calculateStats.R' 'countsimExample.R'
        'countsimExample_dfmat.R' 'makeDF.R' 'countsimQCReport.R'
        'generateIndividualPlots.R'
git_url: https://git.bioconductor.org/packages/countsimQC
git_branch: RELEASE_3_8
git_last_commit: 47669e3
git_last_commit_date: 2019-01-04
Date/Publication: 2019-01-04
NeedsCompilation: no
Packaged: 2019-01-05 05:15:04 UTC; biocbuild
Built: R 3.5.2; ; 2019-01-05 11:50:48 UTC; windows
