Package: cosmiq
Type: Package
Title: cosmiq - COmbining Single Masses Into Quantities
Version: 1.16.1
Author: David Fischer <dajofischer@googlemail.com>, Christian Panse
        <cp@fgcz.ethz.ch>, Endre Laczko <endre.laczko@fgcz.uzh.ch>
Maintainer: David Fischer <dajofischer@googlemail.com>, Christian Panse
 <cp@fgcz.ethz.ch>
Depends: R (>= 3.0.2), Rcpp
Imports: pracma, xcms, MassSpecWavelet, faahKO
Suggests: RUnit, BiocGenerics, BiocStyle
Description: cosmiq is a tool for the preprocessing of liquid- or gas -
        chromatography mass spectrometry (LCMS/GCMS) data with a focus
        on metabolomics or lipidomics applications. To improve the
        detection of low abundant signals, cosmiq generates master maps
        of the mZ/RT space from all acquired runs before a peak
        detection algorithm is applied. The result is a more robust
        identification and quantification of low-intensity MS signals
        compared to conventional approaches where peak picking is
        performed in each LCMS/GCMS file separately. The cosmiq package
        builds on the xcmsSet object structure and can be therefore
        integrated well with the package xcms as an alternative
        preprocessing step.
License: GPL-3
URL: http://www.bioconductor.org/packages/devel/bioc/html/cosmiq.html
Collate: combine_spectra.R peakdetection.R eicmatrix.R retention_time.R
        quantify_combined.R create_datamatrix.R cosmiq.R
LazyData: false
biocViews: ImmunoOncology, MassSpectrometry, Metabolomics
git_url: https://git.bioconductor.org/packages/cosmiq
git_branch: RELEASE_3_8
git_last_commit: 5b7a4fc
git_last_commit_date: 2019-01-04
Date/Publication: 2019-01-04
NeedsCompilation: yes
Packaged: 2019-01-05 03:10:32 UTC; biocbuild
Built: R 3.5.2; i386-w64-mingw32; 2019-01-05 11:50:39 UTC; windows
Archs: i386, x64
