c2ed019a88d161affe7024c3fbfb3ebd *DESCRIPTION
9f2ac2d2dd49d3d9bc3741a904441862 *INDEX
9be3109ade72692c2905de30df51935d *Meta/Rd.rds
429724b30f0322e2d56778dd130867d3 *Meta/features.rds
66850694ebf8da0746769ac4bc5d6128 *Meta/hsearch.rds
919731275fb05d21d6fed26c96dd34b9 *Meta/links.rds
8ca17d54ccafde48463ee409156f9528 *Meta/nsInfo.rds
0c3ddec2549ff98b1732b7ad8f149dce *Meta/package.rds
2b743203094f05b69d338e08ffa7e0ca *Meta/vignette.rds
7e3da990014f52ce3954dbd8a460f192 *NAMESPACE
dd6be23167e8b793ac67c79c001ad3e7 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/cobindR
192e6e68bda55bfe75468337633ead19 *R/cobindR.rdb
9933111367fe74ad1bf3661eed034cfe *R/cobindR.rdx
ded51f71ec4570726e53717786f79c40 *doc/cobindR.R
496990aaee83d98ebd2a166ebf4593bc *doc/cobindR.Rnw
0d44c3741b69b4621f0e7ee55d5ccf8c *doc/cobindR.pdf
e7225ab133401680051ebb071580b06b *doc/index.html
39be6d459717859da6cda86dcf79ceb1 *extdata/config_default.yml
11654be8f877d9f1dcf4050a7d6e2046 *extdata/example.fasta
2c46ba771fab025d9caa0c6f5d4ad8ba *extdata/pfms/myod.tfpfm
ee0c1768d0850b04bf7dd4279f23bfff *extdata/pfms/soxoctklf.tfpfm
96a7c45735d76974e4c96bd5ddd4d987 *extdata/sox_oct_example_vignette_seqs.fasta
043b0ae785ff9dd7f9ba9cc6e00866de *extdata/ucsc_example_ItemRGBDemo.bed
48119dc94fcce51bfedadd539ac00b8c *help/AnIndex
51d461e010354b4a9e8e1d85140810d6 *help/aliases.rds
e22d4cab8d10df4c1dab90bdd055408b *help/cobindR.rdb
3708607412a4a08813f0cb786f1773f3 *help/cobindR.rdx
abbb1940b2c0ffa5ae1cc779b93740fe *help/paths.rds
0c678b2dec2c6efc05f605a0dd697bd9 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
45ef19f072256896ca4ffa4648aa4ff2 *html/SeqObj-class.html
7d7e130ff51c84281d27edf9f1487a07 *html/bg_binding_sites.html
6553d3598db415d9c9a46442c3e235b0 *html/bg_pairs.html
35bffb6a1a546b7250111630a8d1754f *html/bg_sequence_origin.html
0218ff25d9c5de967339eafb3af95ee6 *html/bg_sequence_source.html
66327cdab0566b52bd7833932066991f *html/bg_sequence_type.html
407b2f847a63f7a5ffacb8f56038a72a *html/bg_sequences.html
c6c28a04a3308728201d8608be1ab03d *html/binding_sites.html
3dbcc15baa1bb4d705000140a2c55f06 *html/cobindRConfiguration.html
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5a8dfa90746a641ee9ae3e70540a54ef *html/cobindr-package.html
6ff36de514bfd886f26306365b069a6c *html/comment.html
4ac75220a2f787161a142e38a9c4660a *html/configuration-class.html
536b386986d400800639d8439efdac08 *html/configuration.html
4c4ffc87999495cecee31a787f4877b2 *html/downstream.html
7e30012acd87e96063c5d7a1e3fcf320 *html/experiment_description.html
08debe965ca3d0779e7e2c92ac5216f0 *html/fdrThreshold.html
c78c380e202c13b7cb45ed6aea48e44d *html/find.pairs.html
a6cda6b4d9cad91f34123a82d8ba448c *html/get.bindingsite.ranges.html
60fb27e4758e89c58e2a184f0c4b16e8 *html/get.pairs.html
78754df3f342ded8f56096eb3e0483b3 *html/get.significant.pairs.html
f07a59cd23db7b64ec34e02917c5bd2c *html/id.html
312c002446c1da1d30080e8b394f5ea5 *html/location.html
cc1c30bc4841852eea050c33c99598c5 *html/mart.html
908e67ed7a4398274712da63350c2d07 *html/max_distance.html
935b894b1a71ab74e5b8d76ba39507e9 *html/name.html
475e37ffaff7b0c8e0d49d504bc76dbf *html/pValue.html
f9ff32612e9a9fc63f4728c440517e6f *html/pairs.html
70d345d901cb0d67861c22a6a1ed39ea *html/pairs_of_interest.html
fdcb6488f8f302e949e08125cbdadea0 *html/path.html
edb37c665b9df28cc0739f876f4cd474 *html/pfm.html
9db2b1b3b553527b37d00f057ce5cc8e *html/pfm_path.html
7ff381f5562dedd75f978e2d5f2415fd *html/plot.detrending.html
49de0bbd0876e5ff4008f56f2a796174 *html/plot.gc.html
99bb6515eb55bccf33d30fdc5efde055 *html/plot.pairdistance.html
b595dc4f123e22ce57370155b2daced1 *html/plot.pairdistribution.html
9bdfe0763a16a8844202f13ee5751413 *html/plot.positionprofile.html
f39f144b163d557dedcc0891868e71d5 *html/plot.positions.html
1d74a8896013d021e456b401bdbe02e8 *html/plot.positions.simple.html
1b2b632a7ba3b3c2e943f5f8656c8f6a *html/plot.tfbs.heatmap.html
e55d6a6fa3ba4f6c01837a50c0dcb645 *html/plot.tfbs.venndiagram.html
f8e49e86fdd1836209d35de2721ee6d8 *html/plot.tfbslogo.html
4066aa756cdcf3cffce3a04653378c60 *html/predicted2pwm.html
3040556c08d1966677e511c7d3debc14 *html/pseudocount.html
1f56eb487ee65b5367bac9c4081443e6 *html/rtfbs.html
43d439bd7c3b74af09dbcb9ea6c37f89 *html/search.gadem.html
6304ff835802e332f1dc4dbf4f28ec46 *html/search.pwm.html
2f2af9ebd96b5bd1abb915fea3b118d7 *html/seqObj.html
9c761f80c2c972124ffbacbf4616802f *html/sequence.html
a5c321f3ae9a8c07c0e99ed6e9dc415e *html/sequence_origin.html
5dfc2824614444b3d99929d44ba47123 *html/sequence_source.html
09ce53efb0f1a36e01a1851cd33326cf *html/sequence_type.html
5e840ba47154066057fe7c567e338ca8 *html/sequences.html
b0ca46a6c4ec46e2f2c3b0c70b3e375e *html/species.html
cd3a748ddadc593d8ca4ae49f1ab264d *html/testCpG.html
20f44bca6dcf0977ebb281627f76591c *html/threshold.html
a480e689b40da7ba687b02f833e05218 *html/uid.html
2b03063170c0277c07a8a605b94ff98d *html/upstream.html
4a8c87b64d47679888039a8456045049 *html/write.bindingsites.html
c3b1359c0dc607dde678f947c3860b87 *html/write.bindingsites.table.html
9b39dd2b65b31823a24eb1903d8731d1 *html/write.pairs.html
accdf7c9839a89f6dedc3809baf8df7c *html/write.sequences.html
b4211ebec6d576c6ab65ba3550d06864 *unitTests/runit-cobindR.R
c60cdccdabfc9bd25185e628114f7ae0 *unitTests/runit-configuration.R
