cicero-package	cicero-package
aggregate_by_cell_bin	aggregate_by_cell_bin
aggregate_nearby_peaks	aggregate_nearby_peaks
annotate_cds_by_site	annotate_cds_by_site
assemble_connections	assemble_connections
build_gene_activity_matrix	build_gene_activity_matrix
cell_data	cell_data
cicero	cicero-package
cicero_data	cicero_data
compare_connections	compare_connections
df_for_coords	df_for_coords
estimate_distance_parameter	estimate_distance_parameter
find_overlapping_ccans	find_overlapping_ccans
find_overlapping_coordinates	find_overlapping_coordinates
generate_ccans	generate_ccans
generate_cicero_models	generate_cicero_models
gene_annotation_sample	gene_annotation_sample
human.hg19.genome	human.hg19.genome
make_atac_cds	make_atac_cds
make_cicero_cds	make_cicero_cds
make_sparse_matrix	make_sparse_matrix
normalize_gene_activities	normalize_gene_activities
plot_accessibility_in_pseudotime	plot_accessibility_in_pseudotime
plot_connections	plot_connections
ranges_for_coords	ranges_for_coords
run_cicero	run_cicero
