b1485612ed55fcaab607d8c7bfa22f91 *DESCRIPTION
8743e1d6364b41b4f8bf54cca948b00b *INDEX
29924ba9ffaa1314588291ef2b03dd87 *Meta/Rd.rds
8e8e2c0fe9fd8b11f8517345f40380b2 *Meta/data.rds
598e05906c76ceab0d9ec8ecaf8877bc *Meta/features.rds
2b8d7a9d82be779b5585f2bacedb34d4 *Meta/hsearch.rds
6b598159bafbfd06cf3d4b4444da8f40 *Meta/links.rds
5210fa967d7b5bf70c4ee4767e677acd *Meta/nsInfo.rds
40f1e91f9443977244497831dccee4d9 *Meta/package.rds
a8c43938b01717afc75194f2728d1757 *Meta/vignette.rds
77b2b480f132cfb12657f858ddf51a76 *NAMESPACE
b559b14bdd8987c6f2bc9eea6d113627 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/canceR
6420a484035e7da60cd4435c198c98ee *R/canceR.rdb
a8f75f8dd4c72fc8f87ee6dc2b86e225 *R/canceR.rdx
15fe8aa3d3511477d1b43b316138018e *canceR.html
d9bdc7200accfe5abfa189bebc6e8617 *canceR_ind.html
3a61242897f150208aac76f332ded4cb *canceRs.html
1f4833481003ef19304d803831fab5ea *data/Circos.RData
f30cfb0a3994268327edfd0eef046404 *data/ClinicalData.txt
dda529991c623b05ccd0471aa6296620 *data/GSEA.1.0.R
bcd46c0df824271e4f28349a74558e54 *data/GeneExpMatrix.txt
c6b0c0ea100c6fcd0b3fe14ba8f4c265 *data/brca_tcga73genes.RData
009c3d7ed6fbde0c0eb0da38a5baa55a *data/brca_tcgaClassifier223.RData
75505bf9ad9560123d546e7f58f71d1e *data/brca_tcgaGSEAlm1021.RData
b3bbe2b239a78da5a8c8924bcfefea18 *data/gbm_tcgaPlotTwoGenProf.RData
5fb247a63a5a7773e6812cdb4de53415 *data/prad_michPhenoTest1021.RData
e46958ae70b6e0126c89c62d75bb0483 *data/ucec_tcga_pubGSEA1021.RData
eecb4b354584b782aaa46938b949b19a *doc/canceR.Rnw
c2652943a1ce067f8a2793aeafd6f4c1 *doc/canceR.pdf
421895b3e2f2b7d33d6269c257cb6c00 *doc/index.html
fa2a9bc2c9f5f66a1dd0949d3ab89f86 *extdata/GeneList/102.txt
3ba1ef55add33304f0bc7a7e793f7678 *extdata/GeneList/1021.txt
e5bd9f234c7de20f611b8fe2d64b8b1f *extdata/GeneList/223.txt
bbdbf94a850f9bbaab38834bc1f1fc38 *extdata/GeneList/73.txt
de3da1f5ee27732ae463b360a39bff4f *extdata/GeneList/DNA_damage_Response.txt
fbff99c1a62a99de287a0d3d7f2b58b3 *extdata/GeneList/Glioblastoma_RTK_Ras_PI3K_AKT_Signaling.txt
68fbb171480cfa4e49e6b6933f564320 *extdata/GeneList/INvasion_and_Metastasis.txt
d82f2ebcd648c596f1280c55803d4060 *extdata/GeneList/ProstateCancer_AR_and_Steroid_synthesis_enzymes.txt
45aca96e3d050e6010c3d94bf8e102f8 *extdata/GeneList/ProstateCancer_DownRegulated_by_Androgen.txt
90cd94d3e4c6fef9622b66cd75429e09 *extdata/MSigDB/c2.cp.reactome.v4.0.symbols.gmt
50cbffde42273958a341f60e50ddb38d *extdata/MSigDB/c5.bp.v4.0.symbols.gmt
4445a1df93dcb6f54dba5fb5b395d32c *extdata/gct_cls/Lung_Bost_collapsed_symbols_common_Mich_Bost.gct
fd45484fbbffbee8036429713d693e3b *extdata/gct_cls/Lung_Boston.cls
6c53ba0c990d98c56c04ad701bf389fd *help/AnIndex
0dcc1d2c7fc2531e2898c250cf95d467 *help/aliases.rds
688823763c8173ac6b8211f9e50702cc *help/canceR.rdb
1b66fd1d3b1ca767521f7cf043072056 *help/canceR.rdx
d659849010380e26e1b46a189b0755a9 *help/paths.rds
297ffb21a074d20810ff50334b496c64 *html/00Index.html
f31b6ede0d4f812aa46615605983450c *html/ClinicalData.html
22586258780cc4eeed65858d08ef5722 *html/GSEA.Analyze.Sets.html
e20a3048b5c2dc5aa5b46930c018325e *html/GSEA.ConsPlot.html
6fef8bb57310903e0696a1468604f368 *html/GSEA.EnrichmentScore.html
5ef6ca13cd2bab8d16c6266fe8792231 *html/GSEA.EnrichmentScore2.html
8731f2f52539326d6b206dcd3a78715b *html/GSEA.Gct2Frame.html
a08f3ee71d44bb2d490ce3f0422552ed *html/GSEA.Gct2Frame2.html
82e8f0736db10ebadfb31d917b88aa20 *html/GSEA.GeneRanking.html
ca820fbbd2c64071ee42cc73cd8b8921 *html/GSEA.HeatMapPlot.html
99296fdf729afccc9c1077e04c3dedac *html/GSEA.HeatMapPlot2.html
4ad16fde1de193c649bfa0a4ee6cbcab *html/GSEA.NormalizeCols.html
b297bb4c4794a755ddbb65cec763499c *html/GSEA.NormalizeRows.html
8e474f84209486bc8ba45666ab244108 *html/GSEA.ReadClsFile.html
0d3163558b1b7e1028013dd43d58d88e *html/GSEA.Res2Frame.html
2c2c206a0ad4cff52648155c11cadeee *html/GSEA.Threshold.html
33b5e32e7042927281fd2e0393ee50ab *html/GSEA.VarFilter.html
f8a7f9a9ea307c699656fc4bc2682159 *html/GSEA.html
7c7e9dc942cbaf719dbf5beafc30d21e *html/GSEA.write.gct.html
b5467f4a2403f4d3ef81911bf6aa4c94 *html/GeneExpMatrix.html
33b23435363e041eefa6877c9835084f *html/Match_GeneList_MSigDB.html
46fca765a94008949f9f22307ab10f40 *html/OLD.GSEA.EnrichmentScore.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
72a5212b0e41802271b2dc8d15ae0b54 *html/Run.GSEA.html
191415a819fb58cde1a1595ee0ca2077 *html/about.html
f6e0ec0b459068d3f15522a4a8f0bc5c *html/canceR.html
ee4bf9fbc7b133528e5229e2f0f46ba7 *html/canceRHelp.html
6360fc62c2046cd10a2a8b082c05c68c *html/canceR_Vignette.html
f8b91bd819dd77b07c52bd23ad20d96a *html/cbind.na.html
3c12b6ca97dfe3a93eb3d56c9d0c100c *html/dialogGeneClassifier.html
3af3d1e797eb54df135e8b8c5a586d7c *html/dialogMetOption.html
e3e66373710d909b9d69722771778f56 *html/dialogMut.html
2647af2fc6db1e751e7a82ad6e553e95 *html/dialogOptionCircos.html
3a574f7ef9dc626fd5a27d8d71783e01 *html/dialogOptionGSEAlm.html
705fda70dd355b72f69667803ba37ad9 *html/dialogOptionPhenoTest.html
8e90b3193900d516b77995abd8ab8659 *html/dialogPlotOption_SkinCor.html
7abfd0c508e0004520d8d75936790ee3 *html/dialogSamplingGSEA.html
fe77be200184d57034948c114e80cbb0 *html/dialogSelectFiles_GSEA.html
ddcd2681ca69d95bd8a911128fe6b8ad *html/dialogSpecificMut.html
5899c5873dab2ed4deee3315109bc954 *html/dialogSummary_GSEA.html
3b2ef795651867c58404bbd7bdf67504 *html/dialoggetGeneListMSigDB.html
5769c303909d8ff7d7743f2af59f9905 *html/displayInTable.html
2572d3039ac447ea6f9ca708df20f57b *html/getCases.html
302ff4e14c9c2d35573a9da5ae98dead *html/getCasesGenProfs.html
20c2f52f250543f258b24eeba4a062b2 *html/getCircos.html
f0470c36cb28dd4396e076442c1478a4 *html/getClinicData_MultipleCases.html
e64faebe0c43410446b0ad403a16fbc3 *html/getClinicalDataMatrix.html
12068fc165e48f7b99c1656178d5baad *html/getCor_ExpCNAMet.html
3c9ca3068e0eb2aa51d5f7d710d8950b *html/getGCTCLSExample.html
d871fb9682adf2b37125dcf822ff2e60 *html/getGCT_CLSfiles.html
3231c2d03f01bb8f72a35fe71108dd99 *html/getGSEAlm_Diseases.html
365e06037cc7444bc0de44fae892d5f4 *html/getGSEAlm_Variables.html
49f82431538c0e4016ce40a575b6c358 *html/getGenProfs.html
87fef328d23ae6f674b08882ee4ea0d9 *html/getGeneExpMatrix.html
fd5b4411871c5da9a064c58a466c4e54 *html/getGeneList.html
9d8d5187cd3e40ccc15a1e5463c34786 *html/getGeneListExample.html
2f4c6dd78e82d8b89197db170ec98491 *html/getGeneListFromMSigDB.html
b7bee49bd27a5d6edbd2b58e18b9d735 *html/getGenesClassifier.html
46c8f45b39417758db9e25e064dab5a2 *html/getGenesTree_MultipleCases.html
29996a244bcb728f3637fd23e0c0732f *html/getGenesTree_SingleCase.html
2ab1636d88a9b6f6e27c31cf1c6d6c12 *html/getInTable.html
58fdee5be7df86e031ee59eefc5a2ef8 *html/getListProfData.html
a622928d472c92de0021ab4257f2a33c *html/getMSigDB.html
9e415e9524ad33dcdf83ebb8c7e2c501 *html/getMSigDBExample.html
3225097384086620aa76c5e7a5c74047 *html/getMSigDBfile.html
30331ef9d4d3350bda9e69dc3fb6011f *html/getMegaProfData.html
f377d6b264009708632b5497a358d3a7 *html/getMetDataMultipleGenes.html
703d54546868868b31c577245cc0b242 *html/getMutData.html
56aba21a9f3488c874d55e0dd41587bd *html/getPhenoTest.html
dde2acc3722ad9716b7ed33d2f90b11c *html/getProfilesDataMultipleGenes.html
3998f258eca6b22ceded23862b6dc527 *html/getProfilesDataSingleGene.html
420420ddd2f1f421773e327a0ab0dbb6 *html/getSpecificMut.html
e4d54677ed7c2809313886a5810c9e24 *html/getSummaryGSEA.html
1ff3b37a71128514fafbd8a15f0f56bf *html/getSurvival.html
696363cc3398f56d0ed3b2e71c309d94 *html/getTextWin.html
c7285d61a9abdbc964e1fb3b5d67a714 *html/geteSet.html
c80afdf48eef811e2a0dc91fc4d96db7 *html/modalDialog.html
3d2d3188efe6f434225d660632683022 *html/myGlobalEnv.html
1e6ad6772981e25038ea1879e61ca937 *html/plotModel.html
2443b2f2920bc284a2c8a404bbf3c49d *html/plot_1Gene_2GenProfs.html
1aa0815be3448c472fe1377a7c64a29f *html/plot_2Genes_1GenProf.html
fe7582f9a754c8eb0608f17157251db6 *html/rbind.na.html
1a16c2e2f8e6fc0d1b7af99b29622e3b *html/setWorkspace.html
3a4fbd7e2a78ceaf915616f29ec48840 *html/testCheckedCaseGenProf.html
dc0943985fb15d1bd5a6ec1f65c5eb93 *index.html
