| build_lncrna_annots {annotatr} | R Documentation |
Using the AnnotationHub package, retrieve transcript level lncRNA annotations for either human (GRCh38) or mouse (GRCm38). If the genome is 'hg19', use the permalink from GENCODE and rtracklayer::import() to download and process.
build_lncrna_annots(genome = c("hg19", "hg38", "mm10"))
genome |
The genome assembly. |
A GRanges object with id giving the transcript_type from the GENCODE file, tx_id being the Ensembl transcript ID, gene_id being the Entrez ID coming from a mapping of gene symbol to Entrez ID, symbol being the gene_name from the GENCODE file, and the type being [genome]_lncrna_gencode.