315f7bf85b9eed508b00e182acf67bc3 *DESCRIPTION
8bd6afcf8e152dc9999d9066707cc81a *INDEX
d97135a67653dd808e55c8bc0d9935dd *Meta/Rd.rds
c7d0b5ea404c2d1c0d113f8312651ba3 *Meta/data.rds
429724b30f0322e2d56778dd130867d3 *Meta/features.rds
66b7d8679ad79871348c9421c6a207f2 *Meta/hsearch.rds
567dc2be5d7d3a19fcc65d8699c57614 *Meta/links.rds
08f3de69089ebb8c2ad3a20b3c8a30c9 *Meta/nsInfo.rds
df901d17bad27d42db4bf2d2874a7256 *Meta/package.rds
f15b1d9a1bacd9aae149f9e68fb0eeca *Meta/vignette.rds
4c7211b722651c56723f769fd74ef39a *NAMESPACE
302eb74005d4628313dd72f235ada0c6 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/VariantTools
34be41eb956addc09b6f4c1e3b99adee *R/VariantTools.rdb
df198e6833de5a1288a593ed070bfd5f *R/VariantTools.rdx
147b05616262b8b0605ad82917fe8c23 *data/vignette.rda
8d5ddf1aee747bfe9f75ad0ffc3f13e3 *doc/VariantTools.R
b7f9d4a21e2fe40fe4373ba070ec12c4 *doc/VariantTools.Rnw
4171dbc2117c43f22174b2f6579c79a1 *doc/VariantTools.pdf
e502007f6e906fa8467344cec2f4e1b6 *doc/fig/VariantCallingProcess.pdf
e6a9a9d24613ddbf590543bc5ebeac0d *doc/fig/bar-caller-freq-summary-dbSNP-count-all.pdf
0ea34819326314eae4c6b9d5f4ee9dbe *doc/fig/bar-fdr-cov-bin-merged-all.pdf
1c91bbadcef2b6cba06c5d9b328ba192 *doc/fig/bar-fnr-cov-bin-merged-all.pdf
380b2a619aefe23bd017320b0f05540f *doc/fig/boxplot-altFraction.pdf
34a468a845bb92d33e20533d70da349b *doc/fig/boxplot-expected-obs-freq-source-merged-vt.pdf
dc08e35af067169253e263d844fbc13f *doc/fig/boxplot-obs-freq-sample-ceu-all.pdf
a6d1a91d902b823ea49e3533087adc3a *doc/fig/density-altFraction.pdf
9081576fb3392c333fa126ad4557c53a *doc/fig/dot-percent-recovered-caller-merged-20-all.pdf
31b854f38096fba1546ecf0124be1101 *doc/fig/errors.pdf
ff7f4e378ea15116c447180c721ed35c *doc/fig/hist-fdr-rep-count-all.pdf
cafe8bda6b95fb9dd48a1f3dcd14fca3 *doc/fig/igv_high_cov_neg.png
72c5d2679455c4913dfc6c684c2839e2 *doc/fig/mix.pdf
5192ba8e79d29bf7c9f7f2008dd7aa98 *doc/fig/post-filters.pdf
c81e6de4687156b4883bdefed5c79edb *doc/fig/variant-calling-filters.pdf
8360dff4ce73e85ebe879d662a8da062 *doc/fig/workflow.pdf
a6d9c0aa068f83ee474249201946c09f *doc/index.html
04f3442396ed48d6be465606e784d7ca *doc/tutorial.org
e18d1dc09c30c968212c5bef7d5dd6da *doc/tutorial.pdf
e372e3b655282fec0a7ca5f149509595 *help/AnIndex
e3341ea4a5f3599ef68c1939aa29b133 *help/VariantTools.rdb
6cefb224f2b5d0b7e3e3505e0f5e9b33 *help/VariantTools.rdx
ff2c0b1f028197b4114450e473e4b2de *help/aliases.rds
05ed2eeddd0781871c943b418906e4ed *help/paths.rds
efa60b38eaf514562b7b198c19d24a7b *html/00Index.html
7ecdb653f2e16a9260cc6b5303c53795 *html/FilterConstructors.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
a8000986e49681baf968ef7107eae7a5 *html/annnotateWithControlDepth.html
bc5b29643e9d0f5f1c0e4e74d67e9def *html/callGenotypes.html
ecb44991999e2ed0c20984fbf3cc7d3a *html/callSampleSpecificVariants.html
6bd6c8ebb2326576e55626201a17ec03 *html/callVariants.html
036e5b7bcbe524e7426327a5b5d590a9 *html/callWildtype.html
e90724096d405fe110868beed7d568e2 *html/concordance.html
bb59aab1eff32d169dad018df4b6c9dd *html/extractCoverageForPositions.html
cc405851c128be704ea33e93f7238d37 *html/matchVariants.html
9b5c4e360735d1c0aa32acbf337b1d15 *html/pileupVariants.html
85ccb19977145e0fedf407d17e38bbdb *html/postFilterVariants.html
250221d4373ecd240d21db02a89abeaa *html/qaVariants.html
016c29efe2604c56f962076e8c8990ff *html/tallyVariants.html
c9fc6fb12983e207e6acdd4d801ac6c6 *html/variantGR2Vcf.html
6e5ea0f3fa75217ff17383eded4a01aa *html/vignette.html
2c4749f07b3615e481b4df89ca88d34d *unitTests/test_calculateConcordanceMatrix.R
2ff6eb94487808d81e15a164c69023f1 *unitTests/test_idVerify.R
cfc6d0f068fbd1c0cf8017e5aae89743 *unitTests/test_variantConcordance.R
a43c2278392bc452656836bbd0ceafae *vcf/header.csv
