cd19d238e0fba8b2d823e2b49c1ddfb6 *DESCRIPTION
27b80f7f7185212dc706b536da0f13b5 *INDEX
ec7d73d97f9ba44166782f3be3ef63a5 *Meta/Rd.rds
77a30dbd9a48297ae6e6ef2194a95267 *Meta/features.rds
242f09ea16fde8e5c5a31f0fd29b33b4 *Meta/hsearch.rds
f5b9d0d6d1481da33efa37f3aa3a302c *Meta/links.rds
37b4d9a85a8918ed1a6df253c12947b3 *Meta/nsInfo.rds
8629387ea9a9129ca42b6c8a8cd7be3f *Meta/package.rds
d5fbbec4f460c545c6058d19b96843e6 *Meta/vignette.rds
bb16bdb8442a85fe4a82fd4b3b10a4b5 *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/SplicingGraphs
85c507c1f7ee8b20e58f9b36e075c155 *R/SplicingGraphs.rdb
e2b7adb27835a42566f9b8ac0e26fe52 *R/SplicingGraphs.rdx
fc9582120b3d0c2d00f824da7ee3bd1c *doc/SplicingGraphs.R
a626d844d683e1994f10de60ca803113 *doc/SplicingGraphs.Rnw
31d5cf20364bd5af37f61db78d67f6a8 *doc/SplicingGraphs.pdf
88377b5fd65dbaaf32cf912ac99e20ac *doc/index.html
e927d6e86c26ef2f567f538e4d02c6bb *extdata/ASpatterns.txt
b10a130d5d8e8aa34a67c0676e678e42 *extdata/TSPCsg.rda
2496dff4893d460511d871a0c485aa6b *extdata/toy_genes.gff3
648ca39416010bda3340da48c26912ef *extdata/toy_overlaps.txt
d3b7b2533bb4e97a3f1be7bf70f4b588 *extdata/toy_reads.sam
ff355f3e1adcaa01590064536ff5380f *help/AnIndex
efe192df29b227f6cc27578994e26987 *help/SplicingGraphs.rdb
f922bccd4f7cf710d1bb437bfe9bc21b *help/SplicingGraphs.rdx
eb2e004ecb182c70964d7711acb71793 *help/aliases.rds
2678611a83d585f68e445074afed3970 *help/paths.rds
f459a58e1084cf64d696f85354ac5eb7 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
20aba5867806998ebded10ab5c841cde *html/SplicingGraphs-class.html
282ffbab897b64a90f78dc60c8b6f8b1 *html/SplicingGraphs-package.html
d5821614407a571c19e3d0168b931592 *html/TSPCsg.html
a97af2edc1545e4ea47fdc827c93c175 *html/assignReads.html
b1c8ac1d520c58637e90aa0dad6a7196 *html/bubbles-methods.html
82d1ee4d820d83e44088face57698c5a *html/countReads-methods.html
5b1676d43e50645e7ba5499678cefa26 *html/plotTranscripts-methods.html
6527b0a58635dcba8d318476d8495362 *html/rsgedgesByGene-methods.html
327dcdca99d6ab8a7daf26417c61d196 *html/sgedges-methods.html
2219031ec742d3cb0b1833394cfac698 *html/sgedgesByGene-methods.html
361e643e289046f23edee70860801088 *html/sgraph-methods.html
c6916444c8a8ad473c5f8471bc23c661 *html/toy_data.html
a95798dc7883c99d683aa773ab4dcb35 *html/txpath-methods.html
f22485f979fcbadb1e6d5c1498f2de11 *scripts/TSPC-utils.R
0ee9097358b000f70562de18bc67a066 *scripts/create-vignette-plots.R
44830c9a0141fe8277304d7419d7a20d *scripts/makeTSPCsg.R
1bba688669d20686db16f84dc56a8e2f *unitTests/test_countReads-methods.R
