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| SEPA-package | SEPA: Single-Cell Gene Expression Pattern Analysis |
| HSMMdata | Sinlge-cell RNA-seq data for HSMM (Human Skeletal Muscle Myoblast) |
| patternGOanalysis | patternGOanalysis |
| patternsummary | patternsummary |
| pseudotime | Pseudo-time Cell Ordering for HSMM Sinlge-cell RNA-seq data |
| pseudotimepattern | pseudotimepattern |
| pseudotimevisualize | pseudotimevisualize |
| SEPA | SEPA: Single-Cell Gene Expression Pattern Analysis |
| SEPAui | SEPAui |
| truetime | True Experiment Time Points for HSMM Sinlge-cell RNA-seq data |
| truetimepattern | truetimepattern |
| truetimevisualize | truetimevisualize |
| windowGOanalysis | windowGOanalysis |
| windowGOvisualize | windowGOvisualize |