rqcGroupCycleAverageQualityCalc {Rqc}R Documentation

Per group average quality across cycles

Description

This function plots cycle-specific quality by groups

Usage

rqcGroupCycleAverageQualityCalc(rqcResultSet)

rqcGroupCycleAverageQualityPlot(rqcResultSet)

Arguments

rqcResultSet

list of RqcResultSet objects created by rqc and rqcQA functions.

Value

ggplot2 object

Functions

Author(s)

Welliton Souza

See Also

rqcCycleAverageQualityPlot plots cycle-specific quality by files

Examples

checkpoint("Rqc", path=system.file(package="Rqc", "extdata"), {
  folder <- system.file(package="ShortRead", "extdata/E-MTAB-1147")
  files <- list.files(full.names=TRUE, path=folder)
  rqcResultSet <- rqcQA(files, pair=c(1,1), workers=1)
}, keep="rqcResultSet")
rqcGroupCycleAverageQualityPlot(rqcResultSet)
[Package Rqc version 1.16.2 Index]