rqcCycleQualityCalc {Rqc}R Documentation

Per cycle quality plot

Description

Creates a graph of per cycle quality.

Usage

rqcCycleQualityCalc(rqcResultSet)

rqcCycleQualityPlot(rqcResultSet)

Arguments

rqcResultSet

list of RqcResultSet objects created by rqc and rqcQA functions.

Value

Plot object from ggplot function.

Functions

Author(s)

Welliton Souza

Examples


checkpoint("Rqc", path=system.file(package="Rqc", "extdata"), {
  folder <- system.file(package="ShortRead", "extdata/E-MTAB-1147")
  files <- list.files(full.names=TRUE, path=folder)
  rqcResultSet <- rqcQA(files, workers=1)
}, keep="rqcResultSet")
rqcCycleQualityPlot(rqcResultSet)
[Package Rqc version 1.16.2 Index]